Literature DB >> 19905151

From a discrete to a continuum model of cell dynamics in one dimension.

Philip J Murray1, Carina M Edwards, Marcus J Tindall, Philip K Maini.   

Abstract

Multiscale modeling is emerging as one of the key challenges in mathematical biology. However, the recent rapid increase in the number of modeling methodologies being used to describe cell populations has raised a number of interesting questions. For example, at the cellular scale, how can the appropriate discrete cell-level model be identified in a given context? Additionally, how can the many phenomenological assumptions used in the derivation of models at the continuum scale be related to individual cell behavior? In order to begin to address such questions, we consider a discrete one-dimensional cell-based model in which cells are assumed to interact via linear springs. From the discrete equations of motion, the continuous Rouse [P. E. Rouse, J. Chem. Phys. 21, 1272 (1953)] model is obtained. This formalism readily allows the definition of a cell number density for which a nonlinear "fast" diffusion equation is derived. Excellent agreement is demonstrated between the continuum and discrete models. Subsequently, via the incorporation of cell division, we demonstrate that the derived nonlinear diffusion model is robust to the inclusion of more realistic biological detail. In the limit of stiff springs, where cells can be considered to be incompressible, we show that cell velocity can be directly related to cell production. This assumption is frequently made in the literature but our derivation places limits on its validity. Finally, the model is compared with a model of a similar form recently derived for a different discrete cell-based model and it is shown how the different diffusion coefficients can be understood in terms of the underlying assumptions about cell behavior in the respective discrete models.

Mesh:

Year:  2009        PMID: 19905151     DOI: 10.1103/PhysRevE.80.031912

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  16 in total

1.  Models of collective cell behaviour with crowding effects: comparing lattice-based and lattice-free approaches.

Authors:  Michael J Plank; Matthew J Simpson
Journal:  J R Soc Interface       Date:  2012-06-13       Impact factor: 4.118

2.  Modelling spatially regulated beta-catenin dynamics and invasion in intestinal crypts.

Authors:  Philip J Murray; Jun-Won Kang; Gary R Mirams; Sung-Young Shin; Helen M Byrne; Philip K Maini; Kwang-Hyun Cho
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

3.  Multi-scale modeling of APC and [Formula: see text]-catenin regulation in the human colonic crypt.

Authors:  Brooks Emerick; Gilberto Schleiniger; Bruce M Boman
Journal:  J Math Biol       Date:  2018-01-04       Impact factor: 2.259

Review 4.  From isolated structures to continuous networks: A categorization of cytoskeleton-based motile engineered biological microstructures.

Authors:  Rachel Andorfer; Joshua D Alper
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2019-02-11

5.  Bridging the gap between individual-based and continuum models of growing cell populations.

Authors:  Mark A J Chaplain; Tommaso Lorenzi; Fiona R Macfarlane
Journal:  J Math Biol       Date:  2019-06-10       Impact factor: 2.259

6.  A one-dimensional individual-based mechanical model of cell movement in heterogeneous tissues and its coarse-grained approximation.

Authors:  R J Murphy; P R Buenzli; R E Baker; M J Simpson
Journal:  Proc Math Phys Eng Sci       Date:  2019-07-24       Impact factor: 2.704

7.  A free boundary mechanobiological model of epithelial tissues.

Authors:  Tamara A Tambyah; Ryan J Murphy; Pascal R Buenzli; Matthew J Simpson
Journal:  Proc Math Phys Eng Sci       Date:  2020-11-18       Impact factor: 2.704

8.  A kinetic model to study the regulation of β-catenin, APC, and Axin in the human colonic crypt.

Authors:  Brooks Emerick; Gilberto Schleiniger; Bruce M Boman
Journal:  J Math Biol       Date:  2017-03-07       Impact factor: 2.259

9.  Polarization wave at the onset of collective cell migration.

Authors:  Dietmar Oelz; Hamid Khataee; Andras Czirok; Zoltan Neufeld
Journal:  Phys Rev E       Date:  2019-09       Impact factor: 2.529

10.  From a discrete model of chemotaxis with volume-filling to a generalized Patlak-Keller-Segel model.

Authors:  Federica Bubba; Tommaso Lorenzi; Fiona R Macfarlane
Journal:  Proc Math Phys Eng Sci       Date:  2020-05-13       Impact factor: 2.704

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