Literature DB >> 19902428

Symbol nomenclature for glycan representation.

Ajit Varki1, Richard D Cummings, Jeffrey D Esko, Hudson H Freeze, Pamela Stanley, Jamey D Marth, Carolyn R Bertozzi, Gerald W Hart, Marilynn E Etzler.   

Abstract

The glycan symbol nomenclature proposed by Harvey et al. in these pages has relative advantages and disadvantages. The use of symbols to depict glycans originated from Kornfeld in 1978, was systematized in the First Edition of "Essentials of Glycobiology" and updated for the second edition, with input from relevant organizations such as the Consortium for Functional Glycomics. We also note that >200 illustrations in the second edition have already been published using our nomenclature and are available for download at PubMed.

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Year:  2009        PMID: 19902428      PMCID: PMC2882983          DOI: 10.1002/pmic.200900708

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  2 in total

1.  The synthesis of complex-type oligosaccharides. II. Characterization of the processing intermediates in the synthesis of the complex oligosaccharide units of the vesicular stomatitis virus G protein.

Authors:  S Kornfeld; E Li; I Tabas
Journal:  J Biol Chem       Date:  1978-11-10       Impact factor: 5.157

2.  Proposal for a standard system for drawing structural diagrams of N- and O-linked carbohydrates and related compounds.

Authors:  David J Harvey; Anthony H Merry; Louise Royle; Matthew P Campbell; Raymond A Dwek; Pauline M Rudd
Journal:  Proteomics       Date:  2009-08       Impact factor: 3.984

  2 in total
  67 in total

Review 1.  Sphingolipid and glycosphingolipid metabolic pathways in the era of sphingolipidomics.

Authors:  Alfred H Merrill
Journal:  Chem Rev       Date:  2011-09-26       Impact factor: 60.622

2.  Molecular identification of GD3 as a suppressor of the innate immune response in ovarian cancer.

Authors:  Tonya J Webb; Xiangming Li; Robert L Giuntoli; Pablo H H Lopez; Christoph Heuser; Ronald L Schnaar; Moriya Tsuji; Christian Kurts; Mathias Oelke; Jonathan P Schneck
Journal:  Cancer Res       Date:  2012-05-30       Impact factor: 12.701

3.  Symbol Nomenclature for Graphical Representations of Glycans.

Authors:  Ajit Varki; Richard D Cummings; Markus Aebi; Nicole H Packer; Peter H Seeberger; Jeffrey D Esko; Pamela Stanley; Gerald Hart; Alan Darvill; Taroh Kinoshita; James J Prestegard; Ronald L Schnaar; Hudson H Freeze; Jamey D Marth; Carolyn R Bertozzi; Marilynn E Etzler; Martin Frank; Johannes Fg Vliegenthart; Thomas Lütteke; Serge Perez; Evan Bolton; Pauline Rudd; James Paulson; Minoru Kanehisa; Philip Toukach; Kiyoko F Aoki-Kinoshita; Anne Dell; Hisashi Narimatsu; William York; Naoyuki Taniguchi; Stuart Kornfeld
Journal:  Glycobiology       Date:  2015-12       Impact factor: 4.313

4.  High-mannose glycans are elevated during breast cancer progression.

Authors:  Maria Lorna A de Leoz; Lawrence J T Young; Hyun Joo An; Scott R Kronewitter; Jaehan Kim; Suzanne Miyamoto; Alexander D Borowsky; Helen K Chew; Carlito B Lebrilla
Journal:  Mol Cell Proteomics       Date:  2010-11-19       Impact factor: 5.911

Review 5.  Glycans and glycan-binding proteins in immune regulation: A concise introduction to glycobiology for the allergist.

Authors:  Ronald L Schnaar
Journal:  J Allergy Clin Immunol       Date:  2015-01-30       Impact factor: 10.793

6.  Glycosylation profiles determine extravasation and disease-targeting properties of armed antibodies.

Authors:  Dario Venetz; Christian Hess; Chia-wei Lin; Markus Aebi; Dario Neri
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

7.  Salmonella Typhimurium Enzymatically Landscapes the Host Intestinal Epithelial Cell (IEC) Surface Glycome to Increase Invasion.

Authors:  Dayoung Park; Narine Arabyan; Cynthia C Williams; Ting Song; Anupam Mitra; Bart C Weimer; Emanual Maverakis; Carlito B Lebrilla
Journal:  Mol Cell Proteomics       Date:  2016-10-17       Impact factor: 5.911

8.  Building a PGC-LC-MS N-glycan retention library and elution mapping resource.

Authors:  Jodie L Abrahams; Matthew P Campbell; Nicolle H Packer
Journal:  Glycoconj J       Date:  2017-09-13       Impact factor: 2.916

9.  EK3D: an E. coli K antigen 3-dimensional structure database.

Authors:  Bharathi Reddy Kunduru; Sanjana Anilkumar Nair; Thenmalarchelvi Rathinavelan
Journal:  Nucleic Acids Res       Date:  2015-11-28       Impact factor: 16.971

Review 10.  Bioinformatics and molecular modeling in glycobiology.

Authors:  Martin Frank; Siegfried Schloissnig
Journal:  Cell Mol Life Sci       Date:  2010-04-04       Impact factor: 9.261

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