Literature DB >> 19900575

A data mining framework for time series estimation.

Xiao Hu1, Peng Xu, Shaozhi Wu, Shadnaz Asgari, Marvin Bergsneider.   

Abstract

Time series estimation techniques are usually employed in biomedical research to derive variables less accessible from a set of related and more accessible variables. These techniques are traditionally built from systems modeling approaches including simulation, blind decovolution, and state estimation. In this work, we define target time series (TTS) and its related time series (RTS) as the output and input of a time series estimation process, respectively. We then propose a novel data mining framework for time series estimation when TTS and RTS represent different sets of observed variables from the same dynamic system. This is made possible by mining a database of instances of TTS, its simultaneously recorded RTS, and the input/output dynamic models between them. The key mining strategy is to formulate a mapping function for each TTS-RTS pair in the database that translates a feature vector extracted from RTS to the dissimilarity between true TTS and its estimate from the dynamic model associated with the same TTS-RTS pair. At run time, a feature vector is extracted from an inquiry RTS and supplied to the mapping function associated with each TTS-RTS pair to calculate a dissimilarity measure. An optimal TTS-RTS pair is then selected by analyzing these dissimilarity measures. The associated input/output model of the selected TTS-RTS pair is then used to simulate the TTS given the inquiry RTS as an input. An exemplary implementation was built to address a biomedical problem of noninvasive intracranial pressure assessment. The performance of the proposed method was superior to that of a simple training-free approach of finding the optimal TTS-RTS pair by a conventional similarity-based search on RTS features. 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 19900575      PMCID: PMC2839011          DOI: 10.1016/j.jbi.2009.11.002

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  11 in total

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Authors:  B Fetics; E Nevo; C H Chen; D A Kass
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3.  Comparing the similarity of time-series gene expression using signal processing metrics.

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4.  Temporal data mining for the quality assessment of hemodialysis services.

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5.  Estimation of hidden state variables of the Intracranial system using constrained nonlinear Kalman filters.

Authors:  Xiao Hu; Valeriy Nenov; Marvin Bergsneider; Thomas C Glenn; Paul Vespa; Neil Martin
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8.  Estimation of central aortic pressure waveform by mathematical transformation of radial tonometry pressure. Validation of generalized transfer function.

Authors:  C H Chen; E Nevo; B Fetics; P H Pak; F C Yin; W L Maughan; D A Kass
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9.  Linear and nonlinear analysis of human dynamic cerebral autoregulation.

Authors:  R B Panerai; S L Dawson; J F Potter
Journal:  Am J Physiol       Date:  1999-09

10.  Precedence Temporal Networks to represent temporal relationships in gene expression data.

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  5 in total

1.  A systematic study of linear dynamic modeling of intracranial pressure dynamics.

Authors:  Sunghan Kim; Marvin Bergsneider; Xiao Hu
Journal:  Physiol Meas       Date:  2011-02-01       Impact factor: 2.833

2.  Noninvasive intracranial pressure assessment based on a data-mining approach using a nonlinear mapping function.

Authors:  Sunghan Kim; Fabien Scalzo; Marvin Bergsneider; Paul Vespa; Neil Martin; Xiao Hu
Journal:  IEEE Trans Biomed Eng       Date:  2010-11-22       Impact factor: 4.538

3.  Noninvasive intracranial hypertension detection utilizing semisupervised learning.

Authors:  Sunghan Kim; Robert Hamilton; Stacy Pineles; Marvin Bergsneider; Xiao Hu
Journal:  IEEE Trans Biomed Eng       Date:  2012-11-15       Impact factor: 4.538

4.  Effects of short-term mild hypercapnia during head-down tilt on intracranial pressure and ocular structures in healthy human subjects.

Authors:  Steven S Laurie; Gianmarco Vizzeri; Giovanni Taibbi; Connor R Ferguson; Xiao Hu; Stuart M C Lee; Robert Ploutz-Snyder; Scott M Smith; Sara R Zwart; Michael B Stenger
Journal:  Physiol Rep       Date:  2017-06

5.  Adaptations of data mining methodologies: a systematic literature review.

Authors:  Veronika Plotnikova; Marlon Dumas; Fredrik Milani
Journal:  PeerJ Comput Sci       Date:  2020-05-25
  5 in total

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