Literature DB >> 19898453

A systems view of host defense.

Daniel E Zak, Alan Aderem.   

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Year:  2009        PMID: 19898453      PMCID: PMC3076594          DOI: 10.1038/nbt1109-999

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


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  10 in total

1.  Transcriptional network dynamics in macrophage activation.

Authors:  Roland Nilsson; Vladimir B Bajic; Harukazu Suzuki; Diego di Bernardo; Johan Björkegren; Shintaro Katayama; James F Reid; Matthew J Sweet; Manuela Gariboldi; Piero Carninci; Yosihide Hayashizaki; David A Hume; Jesper Tegner; Timothy Ravasi
Journal:  Genomics       Date:  2006-05-12       Impact factor: 5.736

Review 2.  Genetic analysis of host resistance: Toll-like receptor signaling and immunity at large.

Authors:  Bruce Beutler; Zhengfan Jiang; Philippe Georgel; Karine Crozat; Ben Croker; Sophie Rutschmann; Xin Du; Kasper Hoebe
Journal:  Annu Rev Immunol       Date:  2006       Impact factor: 28.527

3.  Parallel tagged sequencing on the 454 platform.

Authors:  Matthias Meyer; Udo Stenzel; Michael Hofreiter
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

Review 4.  Host innate immune receptors and beyond: making sense of microbial infections.

Authors:  Ken J Ishii; Shohei Koyama; Atsushi Nakagawa; Cevayir Coban; Shizuo Akira
Journal:  Cell Host Microbe       Date:  2008-06-12       Impact factor: 21.023

5.  Next-generation DNA sequencing.

Authors:  Jay Shendure; Hanlee Ji
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

6.  Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4.

Authors:  Mark Gilchrist; Vesteinn Thorsson; Bin Li; Alistair G Rust; Martin Korb; Jared C Roach; Kathleen Kennedy; Tsonwin Hai; Hamid Bolouri; Alan Aderem
Journal:  Nature       Date:  2006-05-11       Impact factor: 49.962

7.  Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics.

Authors:  Stephen A Ramsey; Sandy L Klemm; Daniel E Zak; Kathleen A Kennedy; Vesteinn Thorsson; Bin Li; Mark Gilchrist; Elizabeth S Gold; Carrie D Johnson; Vladimir Litvak; Garnet Navarro; Jared C Roach; Carrie M Rosenberger; Alistair G Rust; Natalya Yudkovsky; Alan Aderem; Ilya Shmulevich
Journal:  PLoS Comput Biol       Date:  2008-03-21       Impact factor: 4.475

8.  Function of C/EBPdelta in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals.

Authors:  Vladimir Litvak; Stephen A Ramsey; Alistair G Rust; Daniel E Zak; Kathleen A Kennedy; Aaron E Lampano; Matti Nykter; Ilya Shmulevich; Alan Aderem
Journal:  Nat Immunol       Date:  2009-03-08       Impact factor: 25.606

9.  The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Authors:  Harukazu Suzuki; Alistair R R Forrest; Erik van Nimwegen; Carsten O Daub; Piotr J Balwierz; Katharine M Irvine; Timo Lassmann; Timothy Ravasi; Yuki Hasegawa; Michiel J L de Hoon; Shintaro Katayama; Kate Schroder; Piero Carninci; Yasuhiro Tomaru; Mutsumi Kanamori-Katayama; Atsutaka Kubosaki; Altuna Akalin; Yoshinari Ando; Erik Arner; Maki Asada; Hiroshi Asahara; Timothy Bailey; Vladimir B Bajic; Denis Bauer; Anthony G Beckhouse; Nicolas Bertin; Johan Björkegren; Frank Brombacher; Erika Bulger; Alistair M Chalk; Joe Chiba; Nicole Cloonan; Adam Dawe; Josee Dostie; Pär G Engström; Magbubah Essack; Geoffrey J Faulkner; J Lynn Fink; David Fredman; Ko Fujimori; Masaaki Furuno; Takashi Gojobori; Julian Gough; Sean M Grimmond; Mika Gustafsson; Megumi Hashimoto; Takehiro Hashimoto; Mariko Hatakeyama; Susanne Heinzel; Winston Hide; Oliver Hofmann; Michael Hörnquist; Lukasz Huminiecki; Kazuho Ikeo; Naoko Imamoto; Satoshi Inoue; Yusuke Inoue; Ryoko Ishihara; Takao Iwayanagi; Anders Jacobsen; Mandeep Kaur; Hideya Kawaji; Markus C Kerr; Ryuichiro Kimura; Syuhei Kimura; Yasumasa Kimura; Hiroaki Kitano; Hisashi Koga; Toshio Kojima; Shinji Kondo; Takeshi Konno; Anders Krogh; Adele Kruger; Ajit Kumar; Boris Lenhard; Andreas Lennartsson; Morten Lindow; Marina Lizio; Cameron Macpherson; Norihiro Maeda; Christopher A Maher; Monique Maqungo; Jessica Mar; Nicholas A Matigian; Hideo Matsuda; John S Mattick; Stuart Meier; Sei Miyamoto; Etsuko Miyamoto-Sato; Kazuhiko Nakabayashi; Yutaka Nakachi; Mika Nakano; Sanne Nygaard; Toshitsugu Okayama; Yasushi Okazaki; Haruka Okuda-Yabukami; Valerio Orlando; Jun Otomo; Mikhail Pachkov; Nikolai Petrovsky; Charles Plessy; John Quackenbush; Aleksandar Radovanovic; Michael Rehli; Rintaro Saito; Albin Sandelin; Sebastian Schmeier; Christian Schönbach; Ariel S Schwartz; Colin A Semple; Miho Sera; Jessica Severin; Katsuhiko Shirahige; Cas Simons; George St Laurent; Masanori Suzuki; Takahiro Suzuki; Matthew J Sweet; Ryan J Taft; Shizu Takeda; Yoichi Takenaka; Kai Tan; Martin S Taylor; Rohan D Teasdale; Jesper Tegnér; Sarah Teichmann; Eivind Valen; Claes Wahlestedt; Kazunori Waki; Andrew Waterhouse; Christine A Wells; Ole Winther; Linda Wu; Kazumi Yamaguchi; Hiroshi Yanagawa; Jun Yasuda; Mihaela Zavolan; David A Hume; Takahiro Arakawa; Shiro Fukuda; Kengo Imamura; Chikatoshi Kai; Ai Kaiho; Tsugumi Kawashima; Chika Kawazu; Yayoi Kitazume; Miki Kojima; Hisashi Miura; Kayoko Murakami; Mitsuyoshi Murata; Noriko Ninomiya; Hiromi Nishiyori; Shohei Noma; Chihiro Ogawa; Takuma Sano; Christophe Simon; Michihira Tagami; Yukari Takahashi; Jun Kawai; Yoshihide Hayashizaki
Journal:  Nat Genet       Date:  2009-04-19       Impact factor: 38.330

10.  Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses.

Authors:  Ido Amit; Manuel Garber; Nicolas Chevrier; Ana Paula Leite; Yoni Donner; Thomas Eisenhaure; Mitchell Guttman; Jennifer K Grenier; Weibo Li; Or Zuk; Lisa A Schubert; Brian Birditt; Tal Shay; Alon Goren; Xiaolan Zhang; Zachary Smith; Raquel Deering; Rebecca C McDonald; Moran Cabili; Bradley E Bernstein; John L Rinn; Alex Meissner; David E Root; Nir Hacohen; Aviv Regev
Journal:  Science       Date:  2009-09-03       Impact factor: 47.728

  10 in total
  3 in total

Review 1.  Gene-specific epigenetic regulation in serious infections with systemic inflammation.

Authors:  Charles E McCall; Barbara Yoza; Tiefu Liu; Mohamed El Gazzar
Journal:  J Innate Immun       Date:  2010-04-27       Impact factor: 7.349

2.  CD14 is a coreceptor of Toll-like receptors 7 and 9.

Authors:  Christoph L Baumann; Irene M Aspalter; Omar Sharif; Andreas Pichlmair; Stephan Blüml; Florian Grebien; Manuela Bruckner; Pawel Pasierbek; Karin Aumayr; Melanie Planyavsky; Keiryn L Bennett; Jacques Colinge; Sylvia Knapp; Giulio Superti-Furga
Journal:  J Exp Med       Date:  2010-11-15       Impact factor: 14.307

3.  NanoStriDE: normalization and differential expression analysis of NanoString nCounter data.

Authors:  Christopher D Brumbaugh; Hyunsung J Kim; Mario Giovacchini; Nader Pourmand
Journal:  BMC Bioinformatics       Date:  2011-12-16       Impact factor: 3.169

  3 in total

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