Literature DB >> 19888678

Chemical shift assignments for human apurinic/apyrimidinic endonuclease 1.

Brittney A Manvilla1, Kristen M Varney, Alexander C Drohat.   

Abstract

Apurinic/apyrimidinic endonuclease 1 (APE1 or Ref-1) is the major enzyme in mammals for processing abasic sites in DNA. These cytotoxic and mutagenic lesions arise via spontaneous rupture of the base-sugar bond or the removal of damaged bases by a DNA glycosylase. APE1 cleaves the DNA backbone 5' to an abasic site, giving a 3'-OH primer for repair synthesis, and mediates other key repair activities. The DNA repair functions are essential for embryogenesis and cell viability. APE1-deficient cells are hypersensitive to DNA-damaging agents, and APE1 is considered an attractive target for inhibitors that could potentially enhance the efficacy of some anti-cancer agents. To enable an important new method for studying the structure, dynamics, catalytic mechanism, and inhibition of APE1, we assigned the chemical shifts (backbone and (13)C(beta)) of APE1 residues 39-318. We also report a protocol for refolding APE1, which was essential for achieving complete exchange of backbone amide sites for the perdeuterated protein.

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Year:  2009        PMID: 19888678      PMCID: PMC2862823          DOI: 10.1007/s12104-009-9196-y

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  11 in total

1.  Two divalent metal ions in the active site of a new crystal form of human apurinic/apyrimidinic endonuclease, Ape1: implications for the catalytic mechanism.

Authors:  P T Beernink; B W Segelke; M Z Hadi; J P Erzberger; D M Wilson; B Rupp
Journal:  J Mol Biol       Date:  2001-04-06       Impact factor: 5.469

2.  DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected].

Authors:  C D Mol; T Izumi; S Mitra; J A Tainer
Journal:  Nature       Date:  2000-01-27       Impact factor: 49.962

3.  Mars -- robust automatic backbone assignment of proteins.

Authors:  Young-Sang Jung; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

4.  The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites.

Authors:  M A Gorman; S Morera; D G Rothwell; E de La Fortelle; C D Mol; J A Tainer; I D Hickson; P S Freemont
Journal:  EMBO J       Date:  1997-11-03       Impact factor: 11.598

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Investigation of protein refolding using a fractional factorial screen: a study of reagent effects and interactions.

Authors:  Melissa Swope Willis; James K Hogan; Prakash Prabhakar; Xun Liu; Kuenhi Tsai; Yunyi Wei; Ted Fox
Journal:  Protein Sci       Date:  2005-06-03       Impact factor: 6.725

Review 7.  The DNA base excision repair protein Ape1/Ref-1 as a therapeutic and chemopreventive target.

Authors:  Melissa L Fishel; Mark R Kelley
Journal:  Mol Aspects Med       Date:  2007-05-03

8.  Impairment of APE1 function enhances cellular sensitivity to clinically relevant alkylators and antimetabolites.

Authors:  Daniel R McNeill; Wing Lam; Theodore L DeWeese; Yung-Chi Cheng; David M Wilson
Journal:  Mol Cancer Res       Date:  2009-05-26       Impact factor: 5.852

Review 9.  Transcriptional regulatory functions of mammalian AP-endonuclease (APE1/Ref-1), an essential multifunctional protein.

Authors:  Kishor K Bhakat; Anil K Mantha; Sankar Mitra
Journal:  Antioxid Redox Signal       Date:  2009-03       Impact factor: 8.401

10.  TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts.

Authors:  Yang Shen; Frank Delaglio; Gabriel Cornilescu; Ad Bax
Journal:  J Biomol NMR       Date:  2009-06-23       Impact factor: 2.835

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  6 in total

1.  Coordination of MYH DNA glycosylase and APE1 endonuclease activities via physical interactions.

Authors:  Paz J Luncsford; Brittney A Manvilla; Dimeka N Patterson; Shuja S Malik; Jin Jin; Bor-Jang Hwang; Randall Gunther; Snigdha Kalvakolanu; Leonora J Lipinski; Weirong Yuan; Wuyuan Lu; Alexander C Drohat; A-Lien Lu; Eric A Toth
Journal:  DNA Repair (Amst)       Date:  2013-10-24

2.  Structural basis of damage recognition by thymine DNA glycosylase: Key roles for N-terminal residues.

Authors:  Christopher T Coey; Shuja S Malik; Lakshmi S Pidugu; Kristen M Varney; Edwin Pozharski; Alexander C Drohat
Journal:  Nucleic Acids Res       Date:  2016-08-31       Impact factor: 16.971

3.  NMR studies reveal an unexpected binding site for a redox inhibitor of AP endonuclease 1.

Authors:  Brittney A Manvilla; Orrette Wauchope; Katherine L Seley-Radtke; Alexander C Drohat
Journal:  Biochemistry       Date:  2011-11-09       Impact factor: 3.162

4.  Structure of human apurinic/apyrimidinic endonuclease 1 with the essential Mg2+ cofactor.

Authors:  Brittney A Manvilla; Edwin Pozharski; Eric A Toth; Alexander C Drohat
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-11-19

5.  Thymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA.

Authors:  Shuja S Malik; Christopher T Coey; Kristen M Varney; Edwin Pozharski; Alexander C Drohat
Journal:  Nucleic Acids Res       Date:  2015-09-10       Impact factor: 16.971

6.  Correlation between base-excision repair gene polymorphisms and levels of in-vitro BPDE-induced DNA adducts in cultured peripheral blood lymphocytes.

Authors:  Hongping Yu; Hui Zhao; Li-E Wang; Zhensheng Liu; Donghui Li; Qingyi Wei
Journal:  PLoS One       Date:  2012-07-05       Impact factor: 3.240

  6 in total

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