Literature DB >> 19888309

Tracking rates of transcription and splicing in vivo.

M Behfar Ardehali, John T Lis.   

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Year:  2009        PMID： 19888309     DOI： 10.1038/nsmb1109-1123

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  23 in total

Review 1.  Elongation by RNA polymerase II: the short and long of it.

Authors:  Robert J Sims; Rimma Belotserkovskaya; Danny Reinberg
Journal:  Genes Dev       Date:  2004-10-15       Impact factor: 11.361

2.  Progression of the cell cycle through mitosis leads to abortion of nascent transcripts.

Authors:  A W Shermoen; P H O'Farrell
Journal:  Cell       Date:  1991-10-18       Impact factor: 41.582

3.  Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

Review 4.  Promoter-proximal Pol II: when stalling speeds things up.

Authors:  Sergei Nechaev; Karen Adelman
Journal:  Cell Cycle       Date:  2008-03-27       Impact factor: 4.534

5.  The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced.

Authors:  C N Tennyson; H J Klamut; R G Worton
Journal:  Nat Genet       Date:  1995-02       Impact factor: 38.330

6.  Rapid changes in Drosophila transcription after an instantaneous heat shock.

Authors:  T O'Brien; J T Lis
Journal:  Mol Cell Biol       Date:  1993-06       Impact factor: 4.272

7.  Spatial and temporal patterns of E74 transcription during Drosophila development.

Authors:  C S Thummel; K C Burtis; D S Hogness
Journal:  Cell       Date:  1990-04-06       Impact factor: 41.582

8.  P-TEFb is critical for the maturation of RNA polymerase II into productive elongation in vivo.

Authors:  Zhuoyu Ni; Abbie Saunders; Nicholas J Fuda; Jie Yao; Jose-Ramon Suarez; Watt W Webb; John T Lis
Journal:  Mol Cell Biol       Date:  2007-12-10       Impact factor: 4.272

Review 9.  Promoter proximal pausing on genes in metazoans.

Authors:  David S Gilmour
Journal:  Chromosoma       Date:  2008-10-02       Impact factor: 4.316

10.  The transcriptional cycle of HIV-1 in real-time and live cells.

Authors:  Stéphanie Boireau; Paolo Maiuri; Eugenia Basyuk; Manuel de la Mata; Anna Knezevich; Bérangère Pradet-Balade; Volker Bäcker; Alberto Kornblihtt; Alessandro Marcello; Edouard Bertrand
Journal:  J Cell Biol       Date:  2007-10-22       Impact factor: 10.539
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  67 in total

1.  Pol II caught speeding by single gene imaging.

Authors:  Danielle Cannon; Jonathan R Chubb
Journal:  EMBO Rep       Date:  2011-12-01       Impact factor: 8.807

Review 2.  From the genetic architecture to synaptic plasticity in autism spectrum disorder.

Authors:  Thomas Bourgeron
Journal:  Nat Rev Neurosci       Date:  2015-09       Impact factor: 34.870

Review 3.  RNA polymerase II transcription elongation control.

Authors:  Jiannan Guo; David H Price
Journal:  Chem Rev       Date:  2013-08-06       Impact factor: 60.622

4.  Fast transcription rates of RNA polymerase II in human cells.

Authors:  Paolo Maiuri; Anna Knezevich; Alex De Marco; Davide Mazza; Anna Kula; Jim G McNally; Alessandro Marcello
Journal:  EMBO Rep       Date:  2011-12-01       Impact factor: 8.807

5.  Mammalian Heat Shock Response and Mechanisms Underlying Its Genome-wide Transcriptional Regulation.

Authors:  Dig B Mahat; H Hans Salamanca; Fabiana M Duarte; Charles G Danko; John T Lis
Journal:  Mol Cell       Date:  2016-03-24       Impact factor: 17.970

6.  A Developmental Program Truncates Long Transcripts to Temporally Regulate Cell Signaling.

Authors:  Jeremy E Sandler; Jihyun Irizarry; Vincent Stepanik; Leslie Dunipace; Henry Amrhein; Angelike Stathopoulos
Journal:  Dev Cell       Date:  2018-12-17       Impact factor: 12.270

Review 7.  The Arc of cognition: Signaling cascades regulating Arc and implications for cognitive function and disease.

Authors:  Irina Epstein; Steven Finkbeiner
Journal:  Semin Cell Dev Biol       Date:  2018-05       Impact factor: 7.727

8.  Single-molecule studies of the lysine riboswitch reveal effector-dependent conformational dynamics of the aptamer domain.

Authors:  Larry R Fiegland; Andrew D Garst; Robert T Batey; David J Nesbitt
Journal:  Biochemistry       Date:  2012-10-30       Impact factor: 3.162

9.  Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells.

Authors:  Charles G Danko; Nasun Hah; Xin Luo; André L Martins; Leighton Core; John T Lis; Adam Siepel; W Lee Kraus
Journal:  Mol Cell       Date:  2013-03-21       Impact factor: 17.970

10.  Chromatin landscape dictates HSF binding to target DNA elements.

Authors:  Michael J Guertin; John T Lis
Journal:  PLoS Genet       Date:  2010-09-09       Impact factor: 5.917
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