Literature DB >> 19884187

A multiformalism and multiresolution modelling environment: application to the cardiovascular system and its regulation.

Alfredo I Hernández1, Virginie Le Rolle, Antoine Defontaine, Guy Carrault.   

Abstract

The role of modelling and simulation in the systemic analysis of living systems is now clearly established. Emerging disciplines, such as systems biology, and worldwide research actions, such as the Physiome Project or the Virtual Physiological Human, are based on an intensive use of modelling and simulation methodologies and tools. One of the key aspects in this context is to perform an efficient integration of various models representing different biological or physiological functions, at different resolutions, spanning through different scales. This paper presents a multiformalism modelling and simulation environment (M2SL) that has been conceived to ease model integration. A given model is represented as a set of coupled and atomic model components that may be based on different mathematical formalisms with heterogeneous structural and dynamical properties. A co-simulation approach is used to solve these hybrid systems. The pioneering model of the overall regulation of the cardiovascular system proposed by Guyton and co-workers in 1972 has been implemented under M2SL and a pulsatile ventricular model based on a time-varying elastance has been integrated in a multi-resolution approach. Simulations reproducing physiological conditions and using different coupling methods show the benefits of the proposed environment.

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Year:  2009        PMID: 19884187      PMCID: PMC3034733          DOI: 10.1098/rsta.2009.0163

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  23 in total

1.  Computational modeling of cardiovascular response to orthostatic stress.

Authors:  Thomas Heldt; Eun B Shim; Roger D Kamm; Roger G Mark
Journal:  J Appl Physiol (1985)       Date:  2002-03

2.  A paradigm for quantifying ventricular contraction.

Authors:  Joseph L Palladino; Abraham Noordergraaf
Journal:  Cell Mol Biol Lett       Date:  2002       Impact factor: 5.787

Review 3.  The IUPS Physiome Project: a framework for computational physiology.

Authors:  P J Hunter
Journal:  Prog Biophys Mol Biol       Date:  2004 Jun-Jul       Impact factor: 3.667

4.  Multiphysics simulation of left ventricular filling dynamics using fluid-structure interaction finite element method.

Authors:  Hiroshi Watanabe; Seiryo Sugiura; Hidenobu Kafuku; Toshiaki Hisada
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

5.  Coupling of a 3D finite element model of cardiac ventricular mechanics to lumped systems models of the systemic and pulmonic circulation.

Authors:  Roy C P Kerckhoffs; Maxwell L Neal; Quan Gu; James B Bassingthwaighte; Jeff H Omens; Andrew D McCulloch
Journal:  Ann Biomed Eng       Date:  2006-11-08       Impact factor: 3.934

6.  SAPHIR: a physiome core model of body fluid homeostasis and blood pressure regulation.

Authors:  S Randall Thomas; Pierre Baconnier; Julie Fontecave; Jean-Pierre Françoise; François Guillaud; Patrick Hannaert; Alfredo Hernández; Virginie Le Rolle; Pierre Mazière; Fariza Tahi; Ronald J White
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2008-09-13       Impact factor: 4.226

Review 7.  Circulation: overall regulation.

Authors:  A C Guyton; T G Coleman; H J Granger
Journal:  Annu Rev Physiol       Date:  1972       Impact factor: 19.318

8.  Mechanical analysis of congestive heart failure caused by bundle branch block based on an electromechanical canine heart model.

Authors:  Jianhong Dou; Ling Xia; Yu Zhang; Guofa Shou; Qing Wei; Feng Liu; Stuart Crozier
Journal:  Phys Med Biol       Date:  2008-12-19       Impact factor: 3.609

9.  Model-based analysis of myocardial strain data acquired by tissue Doppler imaging.

Authors:  Virginie Le Rolle; Alfredo I Hernández; Pierre-Yves Richard; Erwan Donal; Guy Carrault
Journal:  Artif Intell Med       Date:  2008-08-22       Impact factor: 5.326

10.  The EuroPhysiome, STEP and a roadmap for the virtual physiological human.

Authors:  J W Fenner; B Brook; G Clapworthy; P V Coveney; V Feipel; H Gregersen; D R Hose; P Kohl; P Lawford; K M McCormack; D Pinney; S R Thomas; S Van Sint Jan; S Waters; M Viceconti
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2008-09-13       Impact factor: 4.226

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  5 in total

1.  A model-based approach for the evaluation of vagal and sympathetic activities in a newborn lamb.

Authors:  Virginie Le Rolle; David Ojeda; Alain Beuchée; Jean-Paul Praud; Patrick Pladys; Alfredo I Hernández
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

2.  Multiobjective patient-specific estimation of a coronary circulation model for triple vessel disease.

Authors:  David Ojeda; Virginie Le Rolle; Agnès Drochon; Majid Harmouche; Hervé Corbineau; Jean-Phillipe Verhoye; Alfredo I Hernández
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

3.  Embedding a cardiac pulsatile model into an integrated model of the cardiovascular regulation for heart failure followup.

Authors:  Virginie Le Rolle; David Ojeda; Alfredo I Hernández
Journal:  IEEE Trans Biomed Eng       Date:  2011-06-16       Impact factor: 4.538

4.  Virtual patients and sensitivity analysis of the Guyton model of blood pressure regulation: towards individualized models of whole-body physiology.

Authors:  Robert Moss; Thibault Grosse; Ivanny Marchant; Nathalie Lassau; François Gueyffier; S Randall Thomas
Journal:  PLoS Comput Biol       Date:  2012-06-28       Impact factor: 4.475

Review 5.  Tuneable resolution as a systems biology approach for multi-scale, multi-compartment computational models.

Authors:  Denise E Kirschner; C Anthony Hunt; Simeone Marino; Mohammad Fallahi-Sichani; Jennifer J Linderman
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2014-05-09
  5 in total

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