Literature DB >> 19883123

Characterization of a Ras mutant with identical GDP- and GTP-bound structures .

Bradley Ford1, Sean Boykevisch, Chen Zhao, Simone Kunzelmann, Dafna Bar-Sagi, Christian Herrmann, Nicolas Nassar.   

Abstract

We previously characterized the G60A mutant of Ras and showed that the switch regions of the GTP-bound but not the GDP-bound form of this mutant adopt an "open conformation" similar to that seen in nucleotide-free Ras. Here, we mutate Lys147 of the conserved (145)SAK(147) motif in the G60A background and characterize the resulting double mutant (DM). We show that RasDM is the first structure of a Ras protein with identical GDP- and GTP-bound structures. Both structures adopt the open conformation of the active form of RasG60A. The increase in the accessible surface area of the nucleotide is consistent with a 4-fold increase in its dissociation rate. Stopped-flow experiments show no major difference in the two-step kinetics of association of GDP or GTP with the wild type, G60A, or RasDM. Addition of Sos fails to accelerate nucleotide exchange. Overexpression of the G60A or double mutant of Ras in COS-1 cells fails to activate Erk and shows a strong dominant negative effect. Our data suggest that flexibility at position 60 is required for proper Sos-catalyzed nucleotide exchange and that structural information is somehow shared among the switch regions and the different nucleotide binding motifs.

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Year:  2009        PMID: 19883123      PMCID: PMC4160238          DOI: 10.1021/bi901479b

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  38 in total

1.  Structural evidence for feedback activation by Ras.GTP of the Ras-specific nucleotide exchange factor SOS.

Authors:  S Mariana Margarit; Holger Sondermann; Brian E Hall; Bhushan Nagar; Andre Hoelz; Michelle Pirruccello; Dafna Bar-Sagi; John Kuriyan
Journal:  Cell       Date:  2003-03-07       Impact factor: 41.582

2.  Multiparametric scaling of diffraction intensities.

Authors:  Zbyszek Otwinowski; Dominika Borek; Wladyslaw Majewski; Wladek Minor
Journal:  Acta Crystallogr A       Date:  2003-04-25       Impact factor: 2.290

3.  Structure of a transient intermediate for GTP hydrolysis by ras.

Authors:  Bradley Ford; Viktor Hornak; Holly Kleinman; Nicolas Nassar
Journal:  Structure       Date:  2006-03       Impact factor: 5.006

4.  The G226A mutant of Gs alpha highlights the requirement for dissociation of G protein subunits.

Authors:  E Lee; R Taussig; A G Gilman
Journal:  J Biol Chem       Date:  1992-01-15       Impact factor: 5.157

5.  Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins.

Authors:  M V Milburn; L Tong; A M deVos; A Brünger; Z Yamaizumi; S Nishimura; S H Kim
Journal:  Science       Date:  1990-02-23       Impact factor: 47.728

6.  The kinetic mechanism of Ran--nucleotide exchange catalyzed by RCC1.

Authors:  C Klebe; H Prinz; A Wittinghofer; R S Goody
Journal:  Biochemistry       Date:  1995-10-03       Impact factor: 3.162

7.  Human Sos1: a guanine nucleotide exchange factor for Ras that binds to GRB2.

Authors:  P Chardin; J H Camonis; N W Gale; L van Aelst; J Schlessinger; M H Wigler; D Bar-Sagi
Journal:  Science       Date:  1993-05-28       Impact factor: 47.728

8.  Kinetics and thermodynamics of the interaction of elongation factor Tu with elongation factor Ts, guanine nucleotides, and aminoacyl-tRNA.

Authors:  G Romero; V Chau; R L Biltonen
Journal:  J Biol Chem       Date:  1985-05-25       Impact factor: 5.157

9.  Biochemical and biological consequences of changing the specificity of p21ras from guanosine to xanthosine nucleotides.

Authors:  G Schmidt; C Lenzen; I Simon; R Deuter; R H Cool; R S Goody; A Wittinghofer
Journal:  Oncogene       Date:  1996-01-04       Impact factor: 9.867

10.  The structural basis for the transition from Ras-GTP to Ras-GDP.

Authors:  Brian E Hall; Dafna Bar-Sagi; Nicolas Nassar
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-04       Impact factor: 11.205

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  13 in total

1.  Regulation of RAS oncogenicity by acetylation.

Authors:  Moon Hee Yang; Seth Nickerson; Eric T Kim; Caroline Liot; Gaelle Laurent; Robert Spang; Mark R Philips; Yibing Shan; David E Shaw; Dafna Bar-Sagi; Marcia C Haigis; Kevin M Haigis
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

2.  Structural basis for conformational dynamics of GTP-bound Ras protein.

Authors:  Fumi Shima; Yuichi Ijiri; Shin Muraoka; Jingling Liao; Min Ye; Mitsugu Araki; Kousuke Matsumoto; Naoki Yamamoto; Takeshi Sugimoto; Yoko Yoshikawa; Takashi Kumasaka; Masaki Yamamoto; Atsuo Tamura; Tohru Kataoka
Journal:  J Biol Chem       Date:  2010-05-17       Impact factor: 5.157

3.  Critical roles of interactions among switch I-preceding residues and between switch II and its neighboring alpha-helix in conformational dynamics of the GTP-bound Ras family small GTPases.

Authors:  Kousuke Matsumoto; Fumi Shima; Shin Muraoka; Mitsugu Araki; Lizhi Hu; Yuichi Ijiri; Rina Hirai; Jingling Liao; Takashi Yoshioka; Takashi Kumasaka; Masaki Yamamoto; Atsuo Tamura; Tohru Kataoka
Journal:  J Biol Chem       Date:  2011-03-09       Impact factor: 5.157

Review 4.  Direct small-molecule inhibitors of KRAS: from structural insights to mechanism-based design.

Authors:  Jonathan M L Ostrem; Kevan M Shokat
Journal:  Nat Rev Drug Discov       Date:  2016-07-29       Impact factor: 84.694

5.  Biochemical Classification of Disease-associated Mutants of RAS-like Protein Expressed in Many Tissues (RIT1).

Authors:  Zhenhao Fang; Christopher B Marshall; Jiani C Yin; Mohammad T Mazhab-Jafari; Geneviève M C Gasmi-Seabrook; Matthew J Smith; Tadateru Nishikawa; Yang Xu; Benjamin G Neel; Mitsuhiko Ikura
Journal:  J Biol Chem       Date:  2016-05-18       Impact factor: 5.157

6.  RAS ubiquitylation modulates effector interactions.

Authors:  Ryan Thurman; Edhriz Siraliev-Perez; Sharon L Campbell
Journal:  Small GTPases       Date:  2017-11-29

7.  Structure of the dominant negative S17N mutant of Ras.

Authors:  Nicolas Nassar; Kavita Singh; Miguel Garcia-Diaz
Journal:  Biochemistry       Date:  2010-03-09       Impact factor: 3.162

8.  Comparison of the Conformations of KRAS Isoforms, K-Ras4A and K-Ras4B, Points to Similarities and Significant Differences.

Authors:  Mayukh Chakrabarti; Hyunbum Jang; Ruth Nussinov
Journal:  J Phys Chem B       Date:  2016-01-27       Impact factor: 2.991

9.  Cancer cell growth and survival as a system-level property sustained by enhanced glycolysis and mitochondrial metabolic remodeling.

Authors:  Lilia Alberghina; Daniela Gaglio; Cecilia Gelfi; Rosa M Moresco; Giancarlo Mauri; Paola Bertolazzi; Cristina Messa; Maria C Gilardi; Ferdinando Chiaradonna; Marco Vanoni
Journal:  Front Physiol       Date:  2012-09-12       Impact factor: 4.566

Review 10.  Divergent Mechanisms Activating RAS and Small GTPases Through Post-translational Modification.

Authors:  Natsuki Osaka; Yoshihisa Hirota; Doshun Ito; Yoshiki Ikeda; Ryo Kamata; Yuki Fujii; Venkat R Chirasani; Sharon L Campbell; Koh Takeuchi; Toshiya Senda; Atsuo T Sasaki
Journal:  Front Mol Biosci       Date:  2021-07-08
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