Literature DB >> 19852764

New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses.

Christian Rohde1, Yingying Zhang, Heinrich Stamerjohanns, Kurt Hecher, Richard Reinhardt, Albert Jeltsch.   

Abstract

The Bisulfite Sequencing Data Presentation and Compilation (BDPC) web interface for compilation and presentation of data from bisulfite sequencing DNA methylation studies has been improved by adding a new module. This module allows visualization of the whole data set in form of a heatmap of DNA methylation levels and clustering and comparison of tissue methylation patterns. It can also be used for data not processed by BDPC. In addition, several functions of the existing BDPC compilation module have been improved.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19852764     DOI: 10.2144/000113196

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  3 in total

1.  The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation.

Authors:  Arunkumar Dhayalan; Arumugam Rajavelu; Philipp Rathert; Raluca Tamas; Renata Z Jurkowska; Sergey Ragozin; Albert Jeltsch
Journal:  J Biol Chem       Date:  2010-06-11       Impact factor: 5.157

2.  BISMA--fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences.

Authors:  Christian Rohde; Yingying Zhang; Richard Reinhardt; Albert Jeltsch
Journal:  BMC Bioinformatics       Date:  2010-05-06       Impact factor: 3.169

3.  Decreased expression of connective tissue growth factor in non-small cell lung cancer is associated with clinicopathological variables and can be restored by epigenetic modifiers.

Authors:  Hanna Drzewiecka; Bartłomiej Gałęcki; Donata Jarmołowska-Jurczyszyn; Andrzej Kluk; Wojciech Dyszkiewicz; Paweł P Jagodziński
Journal:  J Cancer Res Clin Oncol       Date:  2016-07-08       Impact factor: 4.553

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.