Literature DB >> 19851739

Development of a method based on surface enhanced laser desorption and ionization time of flight mass spectrometry for rapid identification of Klebsiella pneumoniae.

Daiwen Xiao1, Yongchang Yang, Hua Liu, Hua Yu, Yingjun Yan, Wenfang Huang, Wei Jiang, Weijin Liao, Qi Hu, Bo Huang.   

Abstract

A method based on surface enhanced laser desorption and ionization time of flight mass spectrometry (SELDI-TOF MS) was developed for the rapid identification of Klebsiella pneumoniae by directly applying bacterial colonies without further protein extraction. A total of 40 K. pneumoniae and 114 other related microorganisms isolated clinically were analyzed by SELDI-TOF MS. An identification model for K. pneumoniae was established by artificial neural networks (ANNs) with classification accuracy of 100%. The model was blindly tested with 43 K. pneumoniae and 53 control bacteria again. The results showed that the model was successful with accuracy of 96.9%, sensitivity of 100% and specificity of 943%. This strategy is potential for rapid identification of K. pneumoniae.

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Year:  2009        PMID: 19851739     DOI: 10.1007/s12275-009-0092-z

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  20 in total

Review 1.  Artificial neural networks for predictive modeling in prostate cancer.

Authors:  Eduard J Gamito; E David Crawford
Journal:  Curr Oncol Rep       Date:  2004-05       Impact factor: 5.075

2.  Classification of bacterial species from proteomic data using combinatorial approaches incorporating artificial neural networks, cluster analysis and principal components analysis.

Authors:  L Lancashire; O Schmid; H Shah; G Ball
Journal:  Bioinformatics       Date:  2005-03-03       Impact factor: 6.937

3.  Proteomic analysis of inflammatory biomarkers in bronchoalveolar lavage.

Authors:  Carlos de Torre; Sai-Xia Ying; Peter J Munson; G Umberto Meduri; Anthony F Suffredini
Journal:  Proteomics       Date:  2006-07       Impact factor: 3.984

4.  Phylogeny and species identification of the family Enterobacteriaceae based on dnaJ sequences.

Authors:  Hong Nhung Pham; Kiyofumi Ohkusu; Noriko Mishima; Makiko Noda; Mohammad Monir Shah; Xiaosong Sun; Masahiro Hayashi; Takayuki Ezaki
Journal:  Diagn Microbiol Infect Dis       Date:  2007-03-26       Impact factor: 2.803

5.  Identification of plasma protein biomarkers associated with idiopathic pulmonary arterial hypertension.

Authors:  Vahitha B Abdul-Salam; Gideon A Paul; J Omar Ali; Simon R Gibbs; Dinah Rahman; Graham W Taylor; Martin R Wilkins; Robert J Edwards
Journal:  Proteomics       Date:  2006-04       Impact factor: 3.984

6.  Rapid identification of Staphylococci isolated in clinical microbiology laboratories by matrix-assisted laser desorption ionization-time of flight mass spectrometry.

Authors:  Etienne Carbonnelle; Jean-Luc Beretti; Stéphanie Cottyn; Gilles Quesne; Patrick Berche; Xavier Nassif; Agnès Ferroni
Journal:  J Clin Microbiol       Date:  2007-05-16       Impact factor: 5.948

7.  New approaches to identification of bacterial pathogens by surface enhanced laser desorption/ionization time of flight mass spectrometry in concert with artificial neural networks, with special reference to Neisseria gonorrhoeae.

Authors:  Oliver Schmid; Graham Ball; Lee Lancashire; Renata Culak; Haroun Shah
Journal:  J Med Microbiol       Date:  2005-12       Impact factor: 2.472

8.  Optimized application of surface-enhanced laser desorption/ionization time-of-flight MS to differentiate Francisella tularensis at the level of subspecies and individual strains.

Authors:  Eric Seibold; Ralf Bogumil; Sonja Vorderwülbecke; Sascha Al Dahouk; Arno Buckendahl; Herbert Tomaso; Wolf Splettstoesser
Journal:  FEMS Immunol Med Microbiol       Date:  2007-04

9.  Cytologic findings and protein expression profiles associated with ductal carcinoma of the breast in ductal lavage specimens using surface-enhanced laser desorption and ionization-time of flight mass spectrometry.

Authors:  Savvas Mendrinos; John David L Nolen; Toncred Styblo; Grant Carlson; Jan Pohl; Melinda Lewis; James Ritchie
Journal:  Cancer       Date:  2005-06-25       Impact factor: 6.860

10.  Matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of nonfermenting gram-negative bacilli isolated from cystic fibrosis patients.

Authors:  Nicolas Degand; Etienne Carbonnelle; Brunhilde Dauphin; Jean-Luc Beretti; Muriel Le Bourgeois; Isabelle Sermet-Gaudelus; Christine Segonds; Patrick Berche; Xavier Nassif; Agnès Ferroni
Journal:  J Clin Microbiol       Date:  2008-08-06       Impact factor: 5.948

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  1 in total

Review 1.  Advances in mass spectrometry for the identification of pathogens.

Authors:  Yen-Peng Ho; P Muralidhar Reddy
Journal:  Mass Spectrom Rev       Date:  2011-05-09       Impact factor: 10.946

  1 in total

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