Literature DB >> 19851006

Purification and crystallization of a putative transcriptional regulator of the benzoate oxidation pathway in Burkholderia xenovorans LB400.

Adrienne M Law1, Jasleen Bains, Martin J Boulanger.   

Abstract

Burkholderia xenovorans LB400 harbours two paralogous copies of the recently discovered benzoate oxidation (box) pathway. While both copies are functional, the paralogues are differentially regulated and flanked by putative transcriptional regulators from distinct families. The putative LysR-type transcriptional regulator (LTTR) adjacent to the megaplasmid-encoded box enzymes, Bxe_C0898, has been produced recombinantly in Escherichia coli and purified to homogeneity. Gel-filtration studies show that Bxe_C0898 is a tetramer in solution, consistent with previously characterized LTTRs. Bxe_C0898 crystallized with four molecules in the asymmetric unit of the P4(3)2(1)2/P4(1)2(1)2 unit cell with a solvent content of 61.19%, as indicated by processing of the X-ray diffraction data. DNA-protection assays are currently under way in order to identify potential operator regions for this LTTR and to define its role in regulation of the box pathway.

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Year:  2009        PMID: 19851006      PMCID: PMC2765885          DOI: 10.1107/S1744309109032321

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

1.  The finer things in X-ray diffraction data collection.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

2.  Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend.

Authors:  Shin Muraoka; Rumi Okumura; Naoto Ogawa; Takamasa Nonaka; Kiyotaka Miyashita; Toshiya Senda
Journal:  J Mol Biol       Date:  2003-05-02       Impact factor: 5.469

3.  Development of a bacterial biosensor for nitrotoluenes: the crystal structure of the transcriptional regulator DntR.

Authors:  Irina A Smirnova; Cyril Dian; Gordon A Leonard; Seán McSweeney; Darcy Birse; Peter Brzezinski
Journal:  J Mol Biol       Date:  2004-07-09       Impact factor: 5.469

4.  Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400.

Authors:  V J Denef; J Park; T V Tsoi; J-M Rouillard; H Zhang; J A Wibbenmeyer; W Verstraete; E Gulari; S A Hashsham; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

Review 5.  Bacterial transcriptional regulators for degradation pathways of aromatic compounds.

Authors:  David Tropel; Jan Roelof van der Meer
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

6.  Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400.

Authors:  V J Denef; J A Klappenbach; M A Patrauchan; C Florizone; J L M Rodrigues; T V Tsoi; W Verstraete; L D Eltis; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

7.  In vivo and in vitro investigation of transcriptional regulation by DntR.

Authors:  Rosa Lönneborg; Irina Smirnova; Cyril Dian; Gordon A Leonard; Peter Brzezinski
Journal:  J Mol Biol       Date:  2007-07-03       Impact factor: 5.469

8.  Growth substrate- and phase-specific expression of biphenyl, benzoate, and C1 metabolic pathways in Burkholderia xenovorans LB400.

Authors:  V J Denef; M A Patrauchan; C Florizone; J Park; T V Tsoi; W Verstraete; J M Tiedje; L D Eltis
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

9.  Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility.

Authors:  Patrick S G Chain; Vincent J Denef; Konstantinos T Konstantinidis; Lisa M Vergez; Loreine Agulló; Valeria Latorre Reyes; Loren Hauser; Macarena Córdova; Luis Gómez; Myriam González; Miriam Land; Victoria Lao; Frank Larimer; John J LiPuma; Eshwar Mahenthiralingam; Stephanie A Malfatti; Christopher J Marx; J Jacob Parnell; Alban Ramette; Paul Richardson; Michael Seeger; Daryl Smith; Theodore Spilker; Woo Jun Sul; Tamara V Tsoi; Luke E Ulrich; Igor B Zhulin; James M Tiedje
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

10.  Biochemical and structural characterization of the paralogous benzoate CoA ligases from Burkholderia xenovorans LB400: defining the entry point into the novel benzoate oxidation (box) pathway.

Authors:  Jasleen Bains; Martin J Boulanger
Journal:  J Mol Biol       Date:  2007-08-19       Impact factor: 5.469

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