Literature DB >> 19843957

A noisy paracrine signal determines the cellular NF-kappaB response to lipopolysaccharide.

Timothy K Lee1, Elissa M Denny, Jayodita C Sanghvi, Jahlionais E Gaston, Nathaniel D Maynard, Jacob J Hughey, Markus W Covert.   

Abstract

Nearly identical cells can exhibit substantially different responses to the same stimulus. We monitored the nuclear localization dynamics of nuclear factor kappaB (NF-kappaB) in single cells stimulated with tumor necrosis factor-alpha (TNF-alpha) and lipopolysaccharide (LPS). Cells stimulated with TNF-alpha have quantitative differences in NF-kappaB nuclear localization, whereas LPS-stimulated cells can be clustered into transient or persistent responders, representing two qualitatively different groups based on the NF-kappaB response. These distinct behaviors can be linked to a secondary paracrine signal secreted at low concentrations, such that not all cells undergo a second round of NF-kappaB activation. From our single-cell data, we built a computational model that captures cell variability, as well as population behaviors. Our findings show that mammalian cells can create "noisy" environments to produce diversified responses to stimuli.

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Year:  2009        PMID: 19843957      PMCID: PMC2778577          DOI: 10.1126/scisignal.2000599

Source DB:  PubMed          Journal:  Sci Signal        ISSN: 1945-0877            Impact factor:   8.192


  53 in total

Review 1.  Toll-like receptors: critical proteins linking innate and acquired immunity.

Authors:  S Akira; K Takeda; T Kaisho
Journal:  Nat Immunol       Date:  2001-08       Impact factor: 25.606

2.  From fluctuations to phenotypes: the physiology of noise.

Authors:  Michael S Samoilov; Gavin Price; Adam P Arkin
Journal:  Sci STKE       Date:  2006-12-19

3.  Tunability and noise dependence in differentiation dynamics.

Authors:  Gürol M Süel; Rajan P Kulkarni; Jonathan Dworkin; Jordi Garcia-Ojalvo; Michael B Elowitz
Journal:  Science       Date:  2007-03-23       Impact factor: 47.728

4.  Deterministic and stochastic models of NFkappaB pathway.

Authors:  Tomasz Lipniacki; Marek Kimmel
Journal:  Cardiovasc Toxicol       Date:  2007-10-18       Impact factor: 3.231

5.  Noise in gene expression determines cell fate in Bacillus subtilis.

Authors:  Hédia Maamar; Arjun Raj; David Dubnau
Journal:  Science       Date:  2007-06-14       Impact factor: 47.728

6.  The histone H3 lysine-27 demethylase Jmjd3 links inflammation to inhibition of polycomb-mediated gene silencing.

Authors:  Francesca De Santa; Maria Grazia Totaro; Elena Prosperini; Samuele Notarbartolo; Giuseppe Testa; Gioacchino Natoli
Journal:  Cell       Date:  2007-09-06       Impact factor: 41.582

7.  Genome-wide mapping of RELA(p65) binding identifies E2F1 as a transcriptional activator recruited by NF-kappaB upon TLR4 activation.

Authors:  Ching-Aeng Lim; Fei Yao; Joyce Jing-Yi Wong; Joshy George; Han Xu; Kuo Ping Chiu; Wing-Kin Sung; Leonard Lipovich; Vinsensius B Vega; Joanne Chen; Atif Shahab; Xiao Dong Zhao; Martin Hibberd; Chia-Lin Wei; Bing Lim; Huck-Hui Ng; Yijun Ruan; Keh-Chuang Chin
Journal:  Mol Cell       Date:  2007-08-17       Impact factor: 17.970

8.  Automated tracking of gene expression in individual cells and cell compartments.

Authors:  Hailin Shen; Glyn Nelson; David E Nelson; Stephnie Kennedy; David G Spiller; Tony Griffiths; Norman Paton; Stephen G Oliver; Michael R H White; Douglas B Kell
Journal:  J R Soc Interface       Date:  2006-12-22       Impact factor: 4.118

9.  A homeostatic model of IkappaB metabolism to control constitutive NF-kappaB activity.

Authors:  Ellen L O'Dea; Derren Barken; Raechel Q Peralta; Kim T Tran; Shannon L Werner; Jeffrey D Kearns; Andre Levchenko; Alexander Hoffmann
Journal:  Mol Syst Biol       Date:  2007-05-08       Impact factor: 11.429

10.  Universally sloppy parameter sensitivities in systems biology models.

Authors:  Ryan N Gutenkunst; Joshua J Waterfall; Fergal P Casey; Kevin S Brown; Christopher R Myers; James P Sethna
Journal:  PLoS Comput Biol       Date:  2007-08-15       Impact factor: 4.475

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  77 in total

1.  Population robustness arising from cellular heterogeneity.

Authors:  Pawel Paszek; Sheila Ryan; Louise Ashall; Kate Sillitoe; Claire V Harper; David G Spiller; David A Rand; Michael R H White
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

2.  Spatiotemporal inhibition of innate immunity signaling by the Tbc1d23 RAB-GAP.

Authors:  Lesly De Arras; Ivana V Yang; Brad Lackford; David W H Riches; Rytis Prekeris; Jonathan H Freedman; David A Schwartz; Scott Alper
Journal:  J Immunol       Date:  2012-02-06       Impact factor: 5.422

3.  Stimulus-selective crosstalk via the NF-κB signaling system reinforces innate immune response to alleviate gut infection.

Authors:  Balaji Banoth; Budhaditya Chatterjee; Bharath Vijayaragavan; M V R Prasad; Payel Roy; Soumen Basak
Journal:  Elife       Date:  2015-04-23       Impact factor: 8.140

4.  Distinct single-cell signaling characteristics are conferred by the MyD88 and TRIF pathways during TLR4 activation.

Authors:  Zhang Cheng; Brooks Taylor; Diana R Ourthiague; Alexander Hoffmann
Journal:  Sci Signal       Date:  2015-07-14       Impact factor: 8.192

Review 5.  Measuring and modeling apoptosis in single cells.

Authors:  Sabrina L Spencer; Peter K Sorger
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

Review 6.  Computational analysis of signaling patterns in single cells.

Authors:  Denise M Davis; Jeremy E Purvis
Journal:  Semin Cell Dev Biol       Date:  2014-09-26       Impact factor: 7.727

Review 7.  The future of whole-cell modeling.

Authors:  Derek N Macklin; Nicholas A Ruggero; Markus W Covert
Journal:  Curr Opin Biotechnol       Date:  2014-02-17       Impact factor: 9.740

Review 8.  Encoding and decoding cellular information through signaling dynamics.

Authors:  Jeremy E Purvis; Galit Lahav
Journal:  Cell       Date:  2013-02-28       Impact factor: 41.582

9.  Integrative analysis suggests cell type-specific decoding of NF-κB dynamics.

Authors:  Erik W Martin; Alicja Pacholewska; Heta Patel; Himanshu Dashora; Myong-Hee Sung
Journal:  Sci Signal       Date:  2020-02-25       Impact factor: 8.192

10.  High-throughput and single-cell imaging of NF-kappaB oscillations using monoclonal cell lines.

Authors:  Sina Bartfeld; Simone Hess; Bianca Bauer; Nikolaus Machuy; Lesley A Ogilvie; Johannes Schuchhardt; Thomas F Meyer
Journal:  BMC Cell Biol       Date:  2010-03-16       Impact factor: 4.241

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