Literature DB >> 19837043

A guide for in-house design of template-switch-based 5' rapid amplification of cDNA ends systems.

Fernando Lopes Pinto1, Peter Lindblad.   

Abstract

Rapid amplification of cDNA ends (RACE) is an established strategy used to determine the transcription start point(s) and the 5' untranslated region(s) of mRNA. Different approaches to perform 5' RACE are available, and one particularly simple and powerful strategy is based on a phenomenon called template-switching. We investigated different aspects of template-switch-based 5' RACE, and we describe the different steps leading to the in-house development of a complete 5' RACE system-from oligonucleotide design to polymerase chain reaction (PCR) amplification. We show that the resulting system is reliable, time-efficient, and inexpensive. Copyright (c) 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 19837043     DOI: 10.1016/j.ab.2009.10.022

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  21 in total

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Journal:  Methods Mol Biol       Date:  2015

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9.  Base preferences in non-templated nucleotide incorporation by MMLV-derived reverse transcriptases.

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10.  Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation.

Authors:  Matthias Harbers; Sachi Kato; Michiel de Hoon; Yoshihide Hayashizaki; Piero Carninci; Charles Plessy
Journal:  BMC Genomics       Date:  2013-09-30       Impact factor: 3.969

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