Literature DB >> 19836331

On the relationship between diffraction patterns and motions in macromolecular crystals.

Peter B Moore1.   

Abstract

The quality of many macromolecular crystal structures published recently has been enhanced through the use of new methods for treating the effects of molecular motion and disorder on diffraction patterns, among them a technique called translation, libration, screw-axis (TLS) parameterization. TLS parameterization rationalizes those effects in terms of domain-scale, rigid-body motions and, interestingly, the models for molecular motion that emerge when macromolecular diffraction data are analyzed this way often make sense biochemically. Here it is pointed out that all such models should be treated with caution until it is shown that they are consistent with the diffuse scatter produced by the crystals that provided the diffraction data from which they derive.

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Year:  2009        PMID: 19836331     DOI: 10.1016/j.str.2009.08.015

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  21 in total

1.  Validation of crystallographic models containing TLS or other descriptions of anisotropy.

Authors:  Frank Zucker; P Christoph Champ; Ethan A Merritt
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-09

2.  Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse x-ray scattering.

Authors:  Demian Riccardi; Qiang Cui; George N Phillips
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

3.  Arginine kinase: joint crystallographic and NMR RDC analyses link substrate-associated motions to intrinsic flexibility.

Authors:  Xiaogang Niu; Lei Bruschweiler-Li; Omar Davulcu; Jack J Skalicky; Rafael Brüschweiler; Michael S Chapman
Journal:  J Mol Biol       Date:  2010-11-12       Impact factor: 5.469

4.  Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering.

Authors:  Michael E Wall; Andrew H Van Benschoten; Nicholas K Sauter; Paul D Adams; James S Fraser; Thomas C Terwilliger
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-01       Impact factor: 11.205

Review 5.  X-ray Scattering Studies of Protein Structural Dynamics.

Authors:  Steve P Meisburger; William C Thomas; Maxwell B Watkins; Nozomi Ando
Journal:  Chem Rev       Date:  2017-05-30       Impact factor: 60.622

6.  Diffuse X-ray scattering to model protein motions.

Authors:  Michael E Wall; Paul D Adams; James S Fraser; Nicholas K Sauter
Journal:  Structure       Date:  2014-02-04       Impact factor: 5.006

7.  The effects of thermal disorder on the solution-scattering profiles of macromolecules.

Authors:  Peter B Moore
Journal:  Biophys J       Date:  2014-04-01       Impact factor: 4.033

8.  Measuring and modeling diffuse scattering in protein X-ray crystallography.

Authors:  Andrew H Van Benschoten; Lin Liu; Ana Gonzalez; Aaron S Brewster; Nicholas K Sauter; James S Fraser; Michael E Wall
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

9.  Correlated Motions from Crystallography beyond Diffraction.

Authors:  Steve P Meisburger; Nozomi Ando
Journal:  Acc Chem Res       Date:  2017-03-21       Impact factor: 22.384

10.  Diffuse X-ray scattering from correlated motions in a protein crystal.

Authors:  Steve P Meisburger; David A Case; Nozomi Ando
Journal:  Nat Commun       Date:  2020-03-09       Impact factor: 14.919

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