Literature DB >> 19835888

Maximum likelihood estimation of the kinetics of receptor-mediated adhesion.

Bilge Uz1, Erdem Arslan, Ian J Laurenzi.   

Abstract

Adhesion flow assays are commonly employed to characterize the kinetics and force-dependence of receptor-ligand interactions. As transient cellular adhesion events are often mediated by a small number of receptor-ligand complexes (tether bonds) their durations are highly variable, which in turn presents obstacles to standard methods of analysis. In this paper, we employ the stochastic approach to chemical kinetics to construct the pause time distribution. Using this distribution, we develop a robust maximum likelihood (ML) approach to the robust estimation of rate constants associated with receptor-mediated transient adhesion and their confidence intervals. We then formulate robust estimators of the parameters of models for the force-dependence of the off-rate. Lastly, we develop a robust method of elucidation of the force-dependence of the off-rate using Akaike's information criterion (AIC). Our findings conclusively demonstrate that ML estimators of adhesion kinetics are substantial improvements over more conventional approaches, and when combined with Fisher information, they may be used to objectively and reproducibly distinguish the kinetics of different receptor-ligand complexes. Software for the implementation of these methods with experimental data is publicly available as for download at http://www.laurenzi.net.

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Year:  2009        PMID: 19835888     DOI: 10.1016/j.jtbi.2009.10.015

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  3 in total

1.  Exploiting the kinetic interplay between GPIbα-VWF binding interfaces to regulate hemostasis and thrombosis.

Authors:  Jianchung Chen; Hairu Zhou; Alexander Diacovo; X Long Zheng; Jonas Emsley; Thomas G Diacovo
Journal:  Blood       Date:  2014-10-07       Impact factor: 22.113

2.  Approximate maximum likelihood estimation for stochastic chemical kinetics.

Authors:  Aleksandr Andreychenko; Linar Mikeev; David Spieler; Verena Wolf
Journal:  EURASIP J Bioinform Syst Biol       Date:  2012-07-18

3.  Generalized method of moments for estimating parameters of stochastic reaction networks.

Authors:  Alexander Lück; Verena Wolf
Journal:  BMC Syst Biol       Date:  2016-10-21
  3 in total

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