Literature DB >> 19834749

Evaluation of the impact of functional diversification on Poaceae, Brassicaceae, Fabaceae, and Pinaceae alcohol dehydrogenase enzymes.

Claudia E Thompson1, Cláudia L Fernandes, Osmar Norberto de Souza, Loreta B de Freitas, Francisco M Salzano.   

Abstract

The plant alcohol dehydrogenases (ADHs) have been intensively studied in the last years in terms of phylogeny and they have been widely used as a molecular marker. However, almost no information about their three-dimensional structure is available. Several studies point to functional diversification of the ADH, with evidence of its importance, in different organisms, in the ethanol, norepinephrine, dopamine, serotonin, and bile acid metabolism. Computational results demonstrated that in plants these enzymes are submitted to a functional diversification process, which is reinforced by experimental studies indicating distinct enzymatic functions as well as recruitment of specific genes in different tissues. The main objective of this article is to establish a correlation between the functional diversification occurring in the plant alcohol dehydrogenase family and the three-dimensional structures predicted for 17 ADH belonging to Poaceae, Brassicaceae, Fabaceae, and Pinaceae botanical families. Volume, molecular weight and surface areas are not markedly different among them. Important electrostatic and pI differences were observed with the residues responsible for some of them identified, corroborating the function diversification hypothesis. These data furnish important background information for future specific structure-function and evolutionary investigations.

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Year:  2009        PMID: 19834749     DOI: 10.1007/s00894-009-0576-0

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  44 in total

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Journal:  Genetics       Date:  2000-08       Impact factor: 4.562

Review 3.  Plant proteome analysis: a 2006 update.

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Journal:  Proteomics       Date:  2007-08       Impact factor: 3.984

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Authors:  B R Morton; B S Gaut; M T Clegg
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

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Authors:  Jon K Rubach; Bryce V Plapp
Journal:  Biochemistry       Date:  2003-03-18       Impact factor: 3.162

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Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-24       Impact factor: 11.205

Review 7.  NAD-binding domains of dehydrogenases.

Authors:  A M Lesk
Journal:  Curr Opin Struct Biol       Date:  1995-12       Impact factor: 6.809

8.  A Competitive Enzyme-Linked Immunosorbent Assay to Quantify Acetaldehyde-Protein Adducts That Accumulate in Dry Seeds during Aging.

Authors:  M. Zhang; S. Nagata; K. Miyazawa; H. Kikuchi; Y. Esashi
Journal:  Plant Physiol       Date:  1997-02       Impact factor: 8.340

9.  Molecular cloning and DNA sequence of the Arabidopsis thaliana alcohol dehydrogenase gene.

Authors:  C Chang; E M Meyerowitz
Journal:  Proc Natl Acad Sci U S A       Date:  1986-03       Impact factor: 11.205

10.  Active site dynamics in the zinc-dependent medium chain alcohol dehydrogenase superfamily.

Authors:  Patrick J Baker; K Linda Britton; Martin Fisher; Julia Esclapez; Carmen Pire; Maria Jose Bonete; Juan Ferrer; David W Rice
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-08       Impact factor: 11.205

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  6 in total

1.  The Alcohol Dehydrogenase Gene Family in Melon (Cucumis melo L.): Bioinformatic Analysis and Expression Patterns.

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Journal:  Front Plant Sci       Date:  2016-05-18       Impact factor: 5.753

2.  iTRAQ-based Protein Profiling and Fruit Quality Changes at Different Development Stages of Oriental Melon.

Authors:  Xiaoou Guo; Jingjing Xu; Xiaohui Cui; Hao Chen; Hongyan Qi
Journal:  BMC Plant Biol       Date:  2017-01-28       Impact factor: 4.215

3.  Molecular evolution and functional divergence of alcohol dehydrogenases in animals, fungi and plants.

Authors:  Claudia E Thompson; Loreta B Freitas; Francisco M Salzano
Journal:  Genet Mol Biol       Date:  2018       Impact factor: 1.771

4.  Draft Genome Sequence of Phosphate-Solubilizing Chryseobacterium sp. Strain ISE14, a Biocontrol and Plant Growth-Promoting Rhizobacterium Isolated from Cucumber.

Authors:  Jin-Ju Jeong; Mee Kyung Sang; Duleepa Pathiraja; Byeonghyeok Park; In-Geol Choi; Ki Deok Kim
Journal:  Genome Announc       Date:  2018-06-28

5.  Decreased R:FR Ratio in Incident White Light Affects the Composition of Barley Leaf Lipidome and Freezing Tolerance in a Temperature-Dependent Manner.

Authors:  Terézia Kovács; Mohamed Ahres; Tamás Pálmai; László Kovács; Matsuo Uemura; Cristina Crosatti; Gabor Galiba
Journal:  Int J Mol Sci       Date:  2020-10-13       Impact factor: 5.923

6.  A novel zinc-binding alcohol dehydrogenase 2 from Arachis diogoi, expressed in resistance responses against late leaf spot pathogen, induces cell death when transexpressed in tobacco.

Authors:  Dilip Kumar; Sakshi Rampuria; Naveen Kumar Singh; Pulugurtha B Kirti
Journal:  FEBS Open Bio       Date:  2016-02-25       Impact factor: 2.693

  6 in total

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