Literature DB >> 19834575

A Parallel Independent Component Analysis Approach to Investigate Genomic Influence on Brain Function.

Jingyu Liu1, Oguz Demirci, Vince D Calhoun.   

Abstract

Relationships between genomic data and functional brain images are of great interest but require new analysis approaches to integrate the high-dimensional data types. This letter presents an extension of a technique called parallel independent component analysis (paraICA), which enables the joint analysis of multiple modalities including interconnections between them. We extend our earlier work by allowing for multiple interconnections and by providing important overfitting controls. Performance was assessed by simulations under different conditions, and indicated reliable results can be extracted by properly balancing overfitting and underfitting. An application to functional magnetic resonance images and single nucleotide polymorphism array produced interesting findings.

Entities:  

Year:  2008        PMID: 19834575      PMCID: PMC2761666          DOI: 10.1109/LSP.2008.922513

Source DB:  PubMed          Journal:  IEEE Signal Process Lett        ISSN: 1070-9908            Impact factor:   3.109


  11 in total

Review 1.  The precuneus: a review of its functional anatomy and behavioural correlates.

Authors:  Andrea E Cavanna; Michael R Trimble
Journal:  Brain       Date:  2006-01-06       Impact factor: 13.501

2.  An adaptive reflexive processing model of neurocognitive function: supporting evidence from a large scale (n = 100) fMRI study of an auditory oddball task.

Authors:  Kent A Kiehl; Michael C Stevens; Kristin R Laurens; Godfrey Pearlson; Vince D Calhoun; Peter F Liddle
Journal:  Neuroimage       Date:  2005-04-15       Impact factor: 6.556

3.  Estimating the number of independent components for functional magnetic resonance imaging data.

Authors:  Yi-Ou Li; Tülay Adali; Vince D Calhoun
Journal:  Hum Brain Mapp       Date:  2007-11       Impact factor: 5.038

4.  An information-maximization approach to blind separation and blind deconvolution.

Authors:  A J Bell; T J Sejnowski
Journal:  Neural Comput       Date:  1995-11       Impact factor: 2.026

Review 5.  Neuroimaging-genetic paradigms: a new approach to investigate the pathophysiology and treatment of cognitive deficits in schizophrenia.

Authors:  Joshua L Roffman; Anthony P Weiss; Donald C Goff; Scott L Rauch; Daniel R Weinberger
Journal:  Harv Rev Psychiatry       Date:  2006 Mar-Apr       Impact factor: 3.732

6.  Detecting structural changes in whole brain based on nonlinear deformations-application to schizophrenia research.

Authors:  C Gaser; H P Volz; S Kiebel; S Riehemann; H Sauer
Journal:  Neuroimage       Date:  1999-08       Impact factor: 6.556

7.  Reduced density of cholinergic interneurons in the ventral striatum in schizophrenia: an in situ hybridization study.

Authors:  Daphne J Holt; Susan E Bachus; Thomas M Hyde; Michael Wittie; Mary M Herman; Mark Vangel; Clifford B Saper; Joel E Kleinman
Journal:  Biol Psychiatry       Date:  2005-09-01       Impact factor: 13.382

8.  Disrupted in schizophrenia 1 (DISC1): association with schizophrenia, schizoaffective disorder, and bipolar disorder.

Authors:  Colin A Hodgkinson; David Goldman; Judith Jaeger; Shalini Persaud; John M Kane; Robert H Lipsky; Anil K Malhotra
Journal:  Am J Hum Genet       Date:  2004-09-22       Impact factor: 11.025

9.  Linkage of M5 muscarinic and alpha7-nicotinic receptor genes on 15q13 to schizophrenia.

Authors:  Vincenzo De Luca; Haoran Wang; Alessio Squassina; Greg W H Wong; John Yeomans; James L Kennedy
Journal:  Neuropsychobiology       Date:  2004       Impact factor: 2.328

10.  Combining fMRI and SNP data to investigate connections between brain function and genetics using parallel ICA.

Authors:  Jingyu Liu; Godfrey Pearlson; Andreas Windemuth; Gualberto Ruano; Nora I Perrone-Bizzozero; Vince Calhoun
Journal:  Hum Brain Mapp       Date:  2009-01       Impact factor: 5.038

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  26 in total

1.  Association of genetic copy number variations at 11 q14.2 with brain regional volume differences in an alcohol use disorder population.

Authors:  David Boutte; Vince D Calhoun; Jiayu Chen; Amithrupa Sabbineni; Kent Hutchison; Jingyu Liu
Journal:  Alcohol       Date:  2012-06-23       Impact factor: 2.405

2.  Multivariate analysis of subjective responses to d-amphetamine in healthy volunteers finds novel genetic pathway associations.

Authors:  Haley L Yarosh; Shashwath A Meda; Harriet de Wit; Amy B Hart; Godfrey D Pearlson
Journal:  Psychopharmacology (Berl)       Date:  2015-04-07       Impact factor: 4.530

3.  Discovering genetic associations with high-dimensional neuroimaging phenotypes: A sparse reduced-rank regression approach.

Authors:  Maria Vounou; Thomas E Nichols; Giovanni Montana
Journal:  Neuroimage       Date:  2010-07-17       Impact factor: 6.556

4.  Multivariate Genetic Correlates of the Auditory Paired Stimuli-Based P2 Event-Related Potential in the Psychosis Dimension From the BSNIP Study.

Authors:  Mohammadreza Mokhtari; Balaji Narayanan; Jordan P Hamm; Pauline Soh; Vince D Calhoun; Gualberto Ruaño; Mohan Kocherla; Andreas Windemuth; Brett A Clementz; Carol A Tamminga; John A Sweeney; Matcheri S Keshavan; Godfrey D Pearlson
Journal:  Schizophr Bull       Date:  2015-10-12       Impact factor: 9.306

5.  Brain Imaging Genomics: Integrated Analysis and Machine Learning.

Authors:  Li Shen; Paul M Thompson
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2019-10-29       Impact factor: 10.961

6.  Deep Collaborative Learning With Application to the Study of Multimodal Brain Development.

Authors:  Wenxing Hu; Biao Cai; Aiying Zhang; Vince D Calhoun; Yu-Ping Wang
Journal:  IEEE Trans Biomed Eng       Date:  2019-03-13       Impact factor: 4.538

7.  Genetic associations of brain structural networks in schizophrenia: a preliminary study.

Authors:  Kanchana Jagannathan; Vince D Calhoun; Joel Gelernter; Michael C Stevens; Jingyu Liu; Federico Bolognani; Andreas Windemuth; Gualberto Ruaño; Michal Assaf; Godfrey D Pearlson
Journal:  Biol Psychiatry       Date:  2010-08-05       Impact factor: 13.382

8.  Blind Source Separation for Unimodal and Multimodal Brain Networks: A Unifying Framework for Subspace Modeling.

Authors:  Rogers F Silva; Sergey M Plis; Jing Sui; Marios S Pattichis; Tülay Adalı; Vince D Calhoun
Journal:  IEEE J Sel Top Signal Process       Date:  2016-07-27       Impact factor: 6.856

9.  Cross-Tissue Exploration of Genetic and Epigenetic Effects on Brain Gray Matter in Schizophrenia.

Authors:  Dongdong Lin; Jiayu Chen; Stefan Ehrlich; Juan R Bustillo; Nora Perrone-Bizzozero; Esther Walton; Vincent P Clark; Yu-Ping Wang; Jing Sui; Yuhui Du; Beng C Ho; Charles S Schulz; Vince D Calhoun; Jingyu Liu
Journal:  Schizophr Bull       Date:  2018-02-15       Impact factor: 9.306

10.  Meta-Modal Information Flow: A Method for Capturing Multimodal Modular Disconnectivity in Schizophrenia.

Authors:  Haleh Falakshahi; Victor M Vergara; Jingyu Liu; Daniel H Mathalon; Judith M Ford; James Voyvodic; Bryon A Mueller; Aysenil Belger; Sarah McEwen; Steven G Potkin; Adrian Preda; Hooman Rokham; Jing Sui; Jessica A Turner; Sergey Plis; Vince D Calhoun
Journal:  IEEE Trans Biomed Eng       Date:  2020-01-07       Impact factor: 4.538

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