Literature DB >> 19834190

Multi-scale surface descriptors.

Gregory Cipriano1, George N Phillips, Michael Gleicher.   

Abstract

Local shape descriptors compactly characterize regions of a surface, and have been applied to tasks in visualization, shape matching, and analysis. Classically, curvature has be used as a shape descriptor; however, this differential property characterizes only an infinitesimal neighborhood. In this paper, we provide shape descriptors for surface meshes designed to be multi-scale, that is, capable of characterizing regions of varying size. These descriptors capture statistically the shape of a neighborhood around a central point by fitting a quadratic surface. They therefore mimic differential curvature, are efficient to compute, and encode anisotropy. We show how simple variants of mesh operations can be used to compute the descriptors without resorting to expensive parameterizations, and additionally provide a statistical approximation for reduced computational cost. We show how these descriptors apply to a number of uses in visualization, analysis, and matching of surfaces, particularly to tasks in protein surface analysis.

Entities:  

Year:  2009        PMID: 19834190      PMCID: PMC2873089          DOI: 10.1109/TVCG.2009.168

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  3 in total

1.  Quadratic shape descriptors. 1. Rapid superposition of dissimilar molecules using geometrically invariant surface descriptors.

Authors:  B B Goldman; W T Wipke
Journal:  J Chem Inf Comput Sci       Date:  2000 May-Jun

2.  An intuitive approach to measuring protein surface curvature.

Authors:  Ryan G Coleman; Michael A Burr; Diane L Souvaine; Alan C Cheng
Journal:  Proteins       Date:  2005-12-01

3.  Geometry-dependent lighting.

Authors:  Chang Ha Lee; Xuejun Hao; Amitabh Varshney
Journal:  IEEE Trans Vis Comput Graph       Date:  2006 Mar-Apr       Impact factor: 4.579

  3 in total
  6 in total

1.  Surface-histogram: a new shape descriptor for protein-protein docking.

Authors:  Shengyin Gu; Patrice Koehl; Joel Hass; Nina Amenta
Journal:  Proteins       Date:  2011-11-09

2.  DG-GL: Differential geometry-based geometric learning of molecular datasets.

Authors:  Duc Duy Nguyen; Guo-Wei Wei
Journal:  Int J Numer Method Biomed Eng       Date:  2019-02-07       Impact factor: 2.747

3.  Multiscale geometric modeling of macromolecules I: Cartesian representation.

Authors:  Kelin Xia; Xin Feng; Zhan Chen; Yiying Tong; Guo Wei Wei
Journal:  J Comput Phys       Date:  2014-01       Impact factor: 3.553

4.  Geometric modeling of subcellular structures, organelles, and multiprotein complexes.

Authors:  Xin Feng; Kelin Xia; Yiying Tong; Guo-Wei Wei
Journal:  Int J Numer Method Biomed Eng       Date:  2012-11-21       Impact factor: 2.747

5.  Multiscale geometric modeling of macromolecules II: Lagrangian representation.

Authors:  Xin Feng; Kelin Xia; Zhan Chen; Yiying Tong; Guo-Wei Wei
Journal:  J Comput Chem       Date:  2013-06-29       Impact factor: 3.376

6.  Local functional descriptors for surface comparison based binding prediction.

Authors:  Gregory M Cipriano; George N Phillips; Michael Gleicher
Journal:  BMC Bioinformatics       Date:  2012-11-24       Impact factor: 3.169

  6 in total

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