Literature DB >> 19834157

Interaction techniques for selecting and manipulating subgraphs in network visualizations.

Michael J McGuffin1, Igor Jurisica.   

Abstract

We present a novel and extensible set of interaction techniques for manipulating visualizations of networks by selecting subgraphs and then applying various commands to modify their layout or graphical properties. Our techniques integrate traditional rectangle and lasso selection, and also support selecting a node's neighbourhood by dragging out its radius (in edges) using a novel kind of radial menu. Commands for translation, rotation, scaling, or modifying graphical properties (such as opacity) and layout patterns can be performed by using a hotbox (a transiently popped-up, semi-transparent set of widgets) that has been extended in novel ways to integrate specification of commands with 1D or 2D arguments. Our techniques require only one mouse button and one keyboard key, and are designed for fast, gestural, in-place interaction. We present the design and integration of these interaction techniques, and illustrate their use in interactive graph visualization. Our techniques are implemented in NAViGaTOR, a software package for visualizing and analyzing biological networks. An initial usability study is also reported.

Entities:  

Mesh:

Year:  2009        PMID: 19834157     DOI: 10.1109/TVCG.2009.151

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  10 in total

1.  Mapping L1 ligase ribozyme conformational switch.

Authors:  George M Giambaşu; Tai-Sung Lee; William G Scott; Darrin M York
Journal:  J Mol Biol       Date:  2012-07-03       Impact factor: 5.469

2.  The Filament Editor: an interactive software environment for visualization, proof-editing and analysis of 3D neuron morphology.

Authors:  Vincent J Dercksen; Hans-Christian Hege; Marcel Oberlaender
Journal:  Neuroinformatics       Date:  2014-04

Review 3.  Visualization of omics data for systems biology.

Authors:  Nils Gehlenborg; Seán I O'Donoghue; Nitin S Baliga; Alexander Goesmann; Matthew A Hibbs; Hiroaki Kitano; Oliver Kohlbacher; Heiko Neuweger; Reinhard Schneider; Dan Tenenbaum; Anne-Claude Gavin
Journal:  Nat Methods       Date:  2010-03       Impact factor: 28.547

4.  atBioNet--an integrated network analysis tool for genomics and biomarker discovery.

Authors:  Yijun Ding; Minjun Chen; Zhichao Liu; Don Ding; Yanbin Ye; Min Zhang; Reagan Kelly; Li Guo; Zhenqiang Su; Stephen C Harris; Feng Qian; Weigong Ge; Hong Fang; Xiaowei Xu; Weida Tong
Journal:  BMC Genomics       Date:  2012-07-20       Impact factor: 3.969

Review 5.  Integrative computational biology for cancer research.

Authors:  Kristen Fortney; Igor Jurisica
Journal:  Hum Genet       Date:  2011-04-22       Impact factor: 4.132

6.  Smoking status impacts microRNA mediated prognosis and lung adenocarcinoma biology.

Authors:  Emily A Vucic; Kelsie L Thu; Larissa A Pikor; Katey S S Enfield; John Yee; John C English; Calum E MacAulay; Stephen Lam; Igor Jurisica; Wan L Lam
Journal:  BMC Cancer       Date:  2014-10-24       Impact factor: 4.430

7.  MONGKIE: an integrated tool for network analysis and visualization for multi-omics data.

Authors:  Yeongjun Jang; Namhee Yu; Jihae Seo; Sun Kim; Sanghyuk Lee
Journal:  Biol Direct       Date:  2016-03-18       Impact factor: 4.540

Review 8.  Computational dynamic approaches for temporal omics data with applications to systems medicine.

Authors:  Yulan Liang; Arpad Kelemen
Journal:  BioData Min       Date:  2017-06-17       Impact factor: 2.522

9.  3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data.

Authors:  Tien-Chueh Kuo; Tze-Feng Tian; Yufeng Jane Tseng
Journal:  BMC Syst Biol       Date:  2013-07-23

10.  Interactive Visualization for Patient-to-Patient Comparison.

Authors:  Quang Vinh Nguyen; Guy Nelmes; Mao Lin Huang; Simeon Simoff; Daniel Catchpoole
Journal:  Genomics Inform       Date:  2014-03-31
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.