Literature DB >> 19834151

Constructing overview+detail dendrogram-matrix views.

Jin Chen1, Alan M MacEachren, Donna J Peuquet.   

Abstract

A dendrogram that visualizes a clustering hierarchy is often integrated with a reorderable matrix for pattern identification. The method is widely used in many research fields including biology, geography, statistics, and data mining. However, most dendrograms do not scale up well, particularly with respect to problems of graphical and cognitive information overload. This research proposes a strategy that links an overview dendrogram and a detail-view dendrogram, each integrated with a reorderable matrix. The overview displays only a user-controlled, limited number of nodes that represent the ""skeleton" of a hierarchy. The detail view displays the sub-tree represented by a selected meta-node in the overview. The research presented here focuses on constructing a concise overview dendrogram and its coordination with a detail view. The proposed method has the following benefits: dramatic alleviation of information overload, enhanced scalability and data abstraction quality on the dendrogram, and the support of data exploration at arbitrary levels of detail. The contribution of the paper includes a new metric to measure the "importance" of nodes in a dendrogram; the method to construct the concise overview dendrogram from the dynamically-identified, important nodes; and measure for evaluating the data abstraction quality for dendrograms. We evaluate and compare the proposed method to some related existing methods, and demonstrating how the proposed method can help users find interesting patterns through a case study on county-level U.S. cervical cancer mortality and demographic data.

Entities:  

Mesh:

Year:  2009        PMID: 19834151      PMCID: PMC3165051          DOI: 10.1109/TVCG.2009.130

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  9 in total

1.  Resolution Control for Balancing Overview + Detail in Spatial, Multivariate Analysis.

Authors:  Jin Chen; Alan M Maceachren
Journal:  Cartogr J       Date:  2008-11-01

2.  K-ary clustering with optimal leaf ordering for gene expression data.

Authors:  Ziv Bar-Joseph; Erik D Demaine; David K Gifford; Nathan Srebro; Angèle M Hamel; Tommi S Jaakkola
Journal:  Bioinformatics       Date:  2003-06-12       Impact factor: 6.937

3.  A visualization system for space-time and multivariate patterns (VIS-STAMP).

Authors:  Diansheng Guo; Jin Chen; Alan M MacEachren; Ke Liao
Journal:  IEEE Trans Vis Comput Graph       Date:  2006 Nov-Dec       Impact factor: 4.579

4.  Measuring data abstraction quality in multiresolution visualizations.

Authors:  Qingguang Cui; Matthew O Ward; Elke A Rundensteiner; Jing Yang
Journal:  IEEE Trans Vis Comput Graph       Date:  2006 Sep-Oct       Impact factor: 4.579

5.  A taxonomy of clutter reduction for information visualisation.

Authors:  Geoffrey Ellis; Alan Dix
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 Nov-Dec       Impact factor: 4.579

6.  Supporting the Process of Exploring and Interpreting Space-Time Multivariate Patterns: The Visual Inquiry Toolkit.

Authors:  Jin Chen; Alan M Maceachren; Diansheng Guo
Journal:  Cartogr Geogr Inf Sci       Date:  2008-01-01

7.  Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.

Authors:  A A Alizadeh; M B Eisen; R E Davis; C Ma; I S Lossos; A Rosenwald; J C Boldrick; H Sabet; T Tran; X Yu; J I Powell; L Yang; G E Marti; T Moore; J Hudson; L Lu; D B Lewis; R Tibshirani; G Sherlock; W C Chan; T C Greiner; D D Weisenburger; J O Armitage; R Warnke; R Levy; W Wilson; M R Grever; J C Byrd; D Botstein; P O Brown; L M Staudt
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

8.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

9.  Geovisual analytics to enhance spatial scan statistic interpretation: an analysis of U.S. cervical cancer mortality.

Authors:  Jin Chen; Robert E Roth; Adam T Naito; Eugene J Lengerich; Alan M Maceachren
Journal:  Int J Health Geogr       Date:  2008-11-07       Impact factor: 3.918

  9 in total
  1 in total

1.  MCLEAN: Multilevel Clustering Exploration As Network.

Authors:  Daniel Alcaide; Jan Aerts
Journal:  PeerJ Comput Sci       Date:  2018-01-29
  1 in total

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