Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 The use of covariance models to annotate RNAs in whole genomes.

Literature DB >> 19833700

The use of covariance models to annotate RNAs in whole genomes.

Abstract

In this review we discuss bioinformatic issues in non-coding RNA analysis, in particular the annotation of genome sequences using covariance models. Some recent innovations for improving the speed and accuracy of covariance models is discussed.

Mesh：

Substances：
RNA, Untranslated

Year: 2009 PMID： 19833700 DOI： 10.1093/bfgp/elp042

Source DB: PubMed Journal: Brief Funct Genomic Proteomic ISSN： 1473-9550

Keyword Cloud
Cited

14 in total

1. Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families.

Authors: Lars Barquist; Sarah W Burge; Paul P Gardner
Journal: Curr Protoc Bioinformatics Date: 2016-06-20

2. Structural divergence creates new functional features in alphavirus genomes.

Authors: Katrina M Kutchko; Emily A Madden; Clayton Morrison; Kenneth S Plante; Wes Sanders; Heather A Vincent; Marta C Cruz Cisneros; Kristin M Long; Nathaniel J Moorman; Mark T Heise; Alain Laederach
Journal: Nucleic Acids Res Date: 2018-04-20 Impact factor: 16.971

Review 3. Co-evolution in the Jungle: From Leafcutter Ant Colonies to Chromosomal Ends.

Authors: Ľubomír Tomáška; Jozef Nosek
Journal: J Mol Evol Date: 2020-03-10 Impact factor: 2.395

4. Inhibition of human BK polyomavirus replication by small noncoding RNAs.

Authors: Irina Tikhanovich; Bo Liang; Cathal Seoighe; William R Folk; Heinz Peter Nasheuer
Journal: J Virol Date: 2011-05-04 Impact factor: 5.103

5. Identification of non-coding RNAs with a new composite feature in the Hybrid Random Forest Ensemble algorithm.

Authors: Supatcha Lertampaiporn; Chinae Thammarongtham; Chakarida Nukoolkit; Boonserm Kaewkamnerdpong; Marasri Ruengjitchatchawalya
Journal: Nucleic Acids Res Date: 2014-04-25 Impact factor: 16.971

6. [Analysis of orthologous lncRNAs in humans and mice and their species-specific epigenetic target genes].

Authors: Yang-Yang Jiang; Hao Zhu; Hai Zhang
Journal: Nan Fang Yi Ke Da Xue Xue Bao Date: 2018-06-20

7. Computational identification of new structured cis-regulatory elements in the 3'-untranslated region of human protein coding genes.

Authors: Xiaowei Sylvia Chen; Chris M Brown
Journal: Nucleic Acids Res Date: 2012-07-20 Impact factor: 16.971