Literature DB >> 19829058

Spliceosomes walk the line: splicing errors and their impact on cellular function.

Shu-Ning Hsu1, Klemens J Hertel.   

Abstract

The splicing of nuclear pre-mRNAs is a fundamental process required for the expression of most metazoan genes. The majority of the approximately 25,000 genes encoded by the human genome has been shown to produce more than one kind of transcripts through alternative splicing. Alternative splicing of pre-mRNAs can lead to the production of multiple protein isoforms from a single gene, significantly enriching the proteomic diversity of higher eukaryotic organisms. Because regulation of this process determines the timing and location that a particular protein isoform is produced, changes of alternative splicing patterns have the potential to modulate many cellular activities. Consequently, pre-mRNA splicing must occur with a high degree of specificity and fidelity to ensure the appropriate expression of functional mRNAs. Here we review recent progress made in understanding the extent of alternative splicing within the human genome with particular emphasis on splicing fidelity.

Entities:  

Mesh:

Year:  2009        PMID: 19829058      PMCID: PMC3912188          DOI: 10.4161/rna.6.5.9860

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  39 in total

1.  A genomic view of alternative splicing.

Authors:  Barmak Modrek; Christopher Lee
Journal:  Nat Genet       Date:  2002-01       Impact factor: 38.330

2.  An mRNA surveillance mechanism that eliminates transcripts lacking termination codons.

Authors:  Pamela A Frischmeyer; Ambro van Hoof; Kathryn O'Donnell; Anthony L Guerrerio; Roy Parker; Harry C Dietz
Journal:  Science       Date:  2002-03-22       Impact factor: 47.728

Review 3.  Pre-mRNA splicing and human disease.

Authors:  Nuno André Faustino; Thomas A Cooper
Journal:  Genes Dev       Date:  2003-02-15       Impact factor: 11.361

Review 4.  Alternative splicing and evolution.

Authors:  Stephanie Boue; Ivica Letunic; Peer Bork
Journal:  Bioessays       Date:  2003-11       Impact factor: 4.345

Review 5.  Alternative pre-mRNA splicing and proteome expansion in metazoans.

Authors:  Tom Maniatis; Bosiljka Tasic
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 6.  Fidelity in protein synthesis.

Authors:  Luisa Cochella; Rachel Green
Journal:  Curr Biol       Date:  2005-07-26       Impact factor: 10.834

7.  A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.

Authors:  Marc Sultan; Marcel H Schulz; Hugues Richard; Alon Magen; Andreas Klingenhoff; Matthias Scherf; Martin Seifert; Tatjana Borodina; Aleksey Soldatov; Dmitri Parkhomchuk; Dominic Schmidt; Sean O'Keeffe; Stefan Haas; Martin Vingron; Hans Lehrach; Marie-Laure Yaspo
Journal:  Science       Date:  2008-07-03       Impact factor: 47.728

Review 8.  The structure and function of proteins involved in mammalian pre-mRNA splicing.

Authors:  A Krämer
Journal:  Annu Rev Biochem       Date:  1996       Impact factor: 23.643

9.  Alternative splicing of the Drosophila Dscam pre-mRNA is both temporally and spatially regulated.

Authors:  A M Celotto; B R Graveley
Journal:  Genetics       Date:  2001-10       Impact factor: 4.562

10.  Conserved alternative splicing and expression patterns of arthropod N-cadherin.

Authors:  Shu-Ning Hsu; Shinichi Yonekura; Chun-Yuan Ting; Hugh M Robertson; Youichi Iwai; Tadashi Uemura; Chi-Hon Lee; Akira Chiba
Journal:  PLoS Genet       Date:  2009-04-03       Impact factor: 5.917

View more
  13 in total

Review 1.  The determinants of alternative RNA splicing in human cells.

Authors:  Tatsiana V Ramanouskaya; Vasily V Grinev
Journal:  Mol Genet Genomics       Date:  2017-07-13       Impact factor: 3.291

2.  α3-Deletion Isoform of HLA-A11 Modulates Cytotoxicity of NK Cells: Correlations with HIV-1 Infection of Cells.

Authors:  Xi-He Zhang; Xiao-Dong Lian; Zheng-Xi Dai; Hong-Yi Zheng; Xin Chen; Yong-Tang Zheng
Journal:  J Immunol       Date:  2017-08-07       Impact factor: 5.422

3.  Circular RNAs are abundant, conserved, and associated with ALU repeats.

Authors:  William R Jeck; Jessica A Sorrentino; Kai Wang; Michael K Slevin; Christin E Burd; Jinze Liu; William F Marzluff; Norman E Sharpless
Journal:  RNA       Date:  2012-12-18       Impact factor: 4.942

Review 4.  Alternative splicing in the regulation of cholesterol homeostasis.

Authors:  Marisa W Medina; Ronald M Krauss
Journal:  Curr Opin Lipidol       Date:  2013-04       Impact factor: 4.776

5.  Genome-wide detection of condition-sensitive alternative splicing in Arabidopsis roots.

Authors:  Wenfeng Li; Wen-Dar Lin; Prasun Ray; Ping Lan; Wolfgang Schmidt
Journal:  Plant Physiol       Date:  2013-06-04       Impact factor: 8.340

6.  A novel splice variant of folate receptor 4 predominantly expressed in regulatory T cells.

Authors:  Yi Tian; Guoqiang Wu; Jun-Chao Xing; Jun Tang; Yi Zhang; Ze-Min Huang; Zheng-Cai Jia; Ren Zhao; Zhi-Qiang Tian; Shu-Feng Wang; Xiao-Ling Chen; Li Wang; Yu-Zhang Wu; Bing Ni
Journal:  BMC Immunol       Date:  2012-06-13       Impact factor: 3.615

7.  Functional transcriptomics in the post-ENCODE era.

Authors:  Jonathan M Mudge; Adam Frankish; Jennifer Harrow
Journal:  Genome Res       Date:  2013-10-30       Impact factor: 9.043

8.  Structural bioinformatics of the human spliceosomal proteome.

Authors:  Iga Korneta; Marcin Magnus; Janusz M Bujnicki
Journal:  Nucleic Acids Res       Date:  2012-05-09       Impact factor: 16.971

9.  RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.

Authors:  Meng How Tan; Kin Fai Au; Arielle L Yablonovitch; Andrea E Wills; Jason Chuang; Julie C Baker; Wing Hung Wong; Jin Billy Li
Journal:  Genome Res       Date:  2012-09-07       Impact factor: 9.043

10.  Genes with a large intronic burden show greater evolutionary conservation on the protein level.

Authors:  Olga Gorlova; Alexey Fedorov; Christopher Logothetis; Christopher Amos; Ivan Gorlov
Journal:  BMC Evol Biol       Date:  2014-03-16       Impact factor: 3.260

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.