Literature DB >> 19823195

Spatial patterns of variation due to natural selection in humans.

John Novembre1, Anna Di Rienzo.   

Abstract

Empowered by technology and sampling efforts designed to facilitate genome-wide association mapping, human geneticists are now studying the geography of genetic variation in unprecedented detail. With high genomic coverage and geographic resolution, these studies are identifying loci with spatial signatures of selection, such as extreme levels of differentiation and correlations with environmental variables. Collectively, patterns at these loci are beginning to provide new insights into the process of human adaptation. Here, we review the challenges of these studies and emerging results, including how human population structure has influenced the response to novel selective pressures.

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Year:  2009        PMID: 19823195      PMCID: PMC3989104          DOI: 10.1038/nrg2632

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  92 in total

1.  Enhanced (hydrodynamic) transport induced by population growth in reaction-diffusion systems with application to population genetics.

Authors:  Marcel Ovidiu Vlad; L Luca Cavalli-Sforza; John Ross
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-01       Impact factor: 11.205

2.  Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa.

Authors:  Sohini Ramachandran; Omkar Deshpande; Charles C Roseman; Noah A Rosenberg; Marcus W Feldman; L Luca Cavalli-Sforza
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-21       Impact factor: 11.205

3.  Evolution under multiallelic migration-selection models.

Authors:  Thomas Nagylaki; Yuan Lou
Journal:  Theor Popul Biol       Date:  2007-03-18       Impact factor: 1.570

4.  Winter temperature and UV are tightly linked to genetic changes in the p53 tumor suppressor pathway in Eastern Asia.

Authors:  Hong Shi; Si-jie Tan; Hua Zhong; Wenwei Hu; Arnold Levine; Chun-jie Xiao; Yi Peng; Xue-bin Qi; Wei-hua Shou; Run-lin Z Ma; Yi Li; Bing Su; Xin Lu
Journal:  Am J Hum Genet       Date:  2009-04-02       Impact factor: 11.025

5.  Surfing during population expansions promotes genetic revolutions and structuration.

Authors:  Laurent Excoffier; Nicolas Ray
Journal:  Trends Ecol Evol       Date:  2008-05-24       Impact factor: 17.712

6.  Polymorphism from environmental heterogeneity: models are only robust if the heterozygote is close in fitness to the favoured homozygote in each environment.

Authors:  R F Hoekstra; R Bijlsma; A J Dolman
Journal:  Genet Res       Date:  1985-06       Impact factor: 1.588

7.  Polymorphism in a varied environment: how robust are the models?

Authors:  J M Smith; R Hoekstra
Journal:  Genet Res       Date:  1980-02       Impact factor: 1.588

8.  The fate of mutations surfing on the wave of a range expansion.

Authors:  Seraina Klopfstein; Mathias Currat; Laurent Excoffier
Journal:  Mol Biol Evol       Date:  2005-11-09       Impact factor: 16.240

9.  Differential susceptibility to hypertension is due to selection during the out-of-Africa expansion.

Authors:  J Hunter Young; Yen-Pei C Chang; James Dae-Ok Kim; Jean-Paul Chretien; Michael J Klag; Michael A Levine; Christopher B Ruff; Nae-Yuh Wang; Aravinda Chakravarti
Journal:  PLoS Genet       Date:  2005-12-30       Impact factor: 5.917

10.  Adaptive variation regulates the expression of the human SGK1 gene in response to stress.

Authors:  Francesca Luca; Sonal Kashyap; Catherine Southard; Min Zou; David Witonsky; Anna Di Rienzo; Suzanne D Conzen
Journal:  PLoS Genet       Date:  2009-05-22       Impact factor: 5.917

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  93 in total

1.  Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs.

Authors:  Brian P McEvoy; Joseph E Powell; Michael E Goddard; Peter M Visscher
Journal:  Genome Res       Date:  2011-04-25       Impact factor: 9.043

2.  Adaptive evolution of loci covarying with the human African Pygmy phenotype.

Authors:  Isabel Mendizabal; Urko M Marigorta; Oscar Lao; David Comas
Journal:  Hum Genet       Date:  2012-03-11       Impact factor: 4.132

3.  The cultural contagion of conflict.

Authors:  Michele Gelfand; Garriy Shteynberg; Tiane Lee; Janetta Lun; Sarah Lyons; Chris Bell; Joan Y Chiao; C Bayan Bruss; May Al Dabbagh; Zeynep Aycan; Abdel-Hamid Abdel-Latif; Munqith Dagher; Hilal Khashan; Nazar Soomro
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-03-05       Impact factor: 6.237

4.  Serial founder effects during range expansion: a spatial analog of genetic drift.

Authors:  Montgomery Slatkin; Laurent Excoffier
Journal:  Genetics       Date:  2012-02-23       Impact factor: 4.562

Review 5.  Recent advances in understanding the role of nutrition in human genome evolution.

Authors:  Kaixiong Ye; Zhenglong Gu
Journal:  Adv Nutr       Date:  2011-11-03       Impact factor: 8.701

6.  Parallel adaptation: one or many waves of advance of an advantageous allele?

Authors:  Peter Ralph; Graham Coop
Journal:  Genetics       Date:  2010-07-26       Impact factor: 4.562

7.  Using environmental correlations to identify loci underlying local adaptation.

Authors:  Graham Coop; David Witonsky; Anna Di Rienzo; Jonathan K Pritchard
Journal:  Genetics       Date:  2010-06-01       Impact factor: 4.562

8.  Integrating evolutionary and functional approaches to infer adaptation at specific loci.

Authors:  Jay F Storz; Christopher W Wheat
Journal:  Evolution       Date:  2010-09       Impact factor: 3.694

Review 9.  Recent advances in the study of fine-scale population structure in humans.

Authors:  John Novembre; Benjamin M Peter
Journal:  Curr Opin Genet Dev       Date:  2016-09-20       Impact factor: 5.578

10.  Positive Emotion Regulation and Psychopathology: A Transdiagnostic Cultural Neuroscience Approach.

Authors:  Lisa A Hechtman; Hannah Raila; Joan Y Chiao; June Gruber
Journal:  J Exp Psychopathol       Date:  2013-05-13
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