Literature DB >> 19820714

A general life-death selection strategy for dissecting protein functions.

Po Hien Ear1, Stephen W Michnick.   

Abstract

Clonal selection strategies are central tools in molecular biology. We developed a general strategy to dissect protein functions through positive and negative clonal selection for protein-protein interactions, based on a protein-fragment complementation assay using Saccharomyces cerevisiae cytosine deaminase as a reporter. We applied this method to mutational or chemical disruption of protein-protein interactions in yeast and to dissection of the functions of an allosterically activated transcription factor, Swi6.

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Year:  2009        PMID: 19820714     DOI: 10.1038/nmeth.1389

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  18 in total

1.  A ligand-reversible dimerization system for controlling protein-protein interactions.

Authors:  C T Rollins; V M Rivera; D N Woolfson; T Keenan; M Hatada; S E Adams; L J Andrade; D Yaeger; M R van Schravendijk; D A Holt; M Gilman; T Clackson
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  Generation of a yeast two-hybrid strain suitable for competitive protein binding analysis.

Authors:  Markus Ralser; Heike Goehler; Erich E Wanker; Hans Lehrach; Sylvia Krobitsch
Journal:  Biotechniques       Date:  2005-08       Impact factor: 1.993

3.  Oligomerization domain-directed reassembly of active dihydrofolate reductase from rationally designed fragments.

Authors:  J N Pelletier; F X Campbell-Valois; S W Michnick
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

4.  Quantitative structure-activity analysis correlating Ras/Raf interaction in vitro to Raf activation in vivo.

Authors:  C Block; R Janknecht; C Herrmann; N Nassar; A Wittinghofer
Journal:  Nat Struct Biol       Date:  1996-03

5.  Structural and functional architecture of the yeast cell-cycle transcription factor swi6.

Authors:  S G Sedgwick; I A Taylor; A C Adam; A Spanos; S Howell; B A Morgan; M K Treiber; N Kanuga; G R Banks; R Foord; S J Smerdon
Journal:  J Mol Biol       Date:  1998-09-04       Impact factor: 5.469

6.  Random mutagenesis and selection of Escherichia coli cytosine deaminase for cancer gene therapy.

Authors:  Sheri D Mahan; Greg C Ireton; Catherine Knoeber; Barry L Stoddard; Margaret E Black
Journal:  Protein Eng Des Sel       Date:  2004-09-20       Impact factor: 1.650

7.  Erythropoietin receptor activation by a ligand-induced conformation change.

Authors:  I Remy; I A Wilson; S W Michnick
Journal:  Science       Date:  1999-02-12       Impact factor: 47.728

8.  Interaction of the yeast Swi4 and Swi6 cell cycle regulatory proteins in vitro.

Authors:  B J Andrews; L A Moore
Journal:  Proc Natl Acad Sci U S A       Date:  1992-12-15       Impact factor: 11.205

Review 9.  Cell-cycle control of gene expression in budding and fission yeast.

Authors:  Jürg Bähler
Journal:  Annu Rev Genet       Date:  2005       Impact factor: 16.830

10.  Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.

Authors:  Teresa Reguly; Ashton Breitkreutz; Lorrie Boucher; Bobby-Joe Breitkreutz; Nizar N Batada; Gary C Hon; Chad L Myers; Ainslie Parsons; Helena Friesen; Rose Oughtred; Amy Tong; Chris Stark; Yuen Ho; David Botstein; Brenda Andrews; Charles Boone; Olga G Troyanskya; Trey Ideker; Kara Dolinski; Mike Tyers
Journal:  J Biol       Date:  2006-06-08
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  20 in total

Review 1.  Diversity in genetic in vivo methods for protein-protein interaction studies: from the yeast two-hybrid system to the mammalian split-luciferase system.

Authors:  Bram Stynen; Hélène Tournu; Jan Tavernier; Patrick Van Dijck
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

2.  Design, selection, and characterization of a split chorismate mutase.

Authors:  Manuel M Müller; Hajo Kries; Eva Csuhai; Peter Kast; Donald Hilvert
Journal:  Protein Sci       Date:  2010-05       Impact factor: 6.725

3.  You too can play with an edge.

Authors:  Michael Costanzo; Anastasia Baryshnikova; Corey Nislow; Brenda Andrews; Charles Boone
Journal:  Nat Methods       Date:  2009-11       Impact factor: 28.547

4.  FRETting about the affinity of bimolecular protein-protein interactions.

Authors:  Tao Lin; Brandon L Scott; Adam D Hoppe; Suvobrata Chakravarty
Journal:  Protein Sci       Date:  2018-10       Impact factor: 6.725

5.  Dissection of Cdk1-cyclin complexes in vivo.

Authors:  Po Hien Ear; Michael J Booth; Diala Abd-Rabbo; Jacqueline Kowarzyk Moreno; Conrad Hall; Daici Chen; Jackie Vogel; Stephen W Michnick
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

6.  An infrared reporter to detect spatiotemporal dynamics of protein-protein interactions.

Authors:  Emmanuelle Tchekanda; Durga Sivanesan; Stephen W Michnick
Journal:  Nat Methods       Date:  2014-04-20       Impact factor: 28.547

7.  Extended Linkers Improve the Detection of Protein-protein Interactions (PPIs) by Dihydrofolate Reductase Protein-fragment Complementation Assay (DHFR PCA) in Living Cells.

Authors:  Andrée-Ève Chrétien; Isabelle Gagnon-Arsenault; Alexandre K Dubé; Xavier Barbeau; Philippe C Després; Claudine Lamothe; Anne-Marie Dion-Côté; Patrick Lagüe; Christian R Landry
Journal:  Mol Cell Proteomics       Date:  2017-12-04       Impact factor: 5.911

8.  Protein interaction perturbation profiling at amino-acid resolution.

Authors:  Jonathan Woodsmith; Luise Apelt; Victoria Casado-Medrano; Ziya Özkan; Bernd Timmermann; Ulrich Stelzl
Journal:  Nat Methods       Date:  2017-10-16       Impact factor: 28.547

9.  Annotator: postprocessing software for generating function-based signatures from quantitative mass spectrometry.

Authors:  Juliesta E Sylvester; Tyler S Bray; Stephen J Kron
Journal:  J Proteome Res       Date:  2012-02-03       Impact factor: 4.466

10.  Systematic functional prioritization of protein posttranslational modifications.

Authors:  Pedro Beltrao; Véronique Albanèse; Lillian R Kenner; Danielle L Swaney; Alma Burlingame; Judit Villén; Wendell A Lim; James S Fraser; Judith Frydman; Nevan J Krogan
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

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