Literature DB >> 19820101

Draft genome sequences of Yersinia pestis isolates from natural foci of endemic plague in China.

Mark Eppinger1, Zhaobiao Guo, Yinong Sebastian, Yajun Song, Luther E Lindler, Ruifu Yang, Jacques Ravel.   

Abstract

To gain insights into the evolutionary origin, emergence, and pathogenicity of the etiologic agent of plague, we have sequenced the genomes of four Yersinia pestis strains isolated from the zoonotic rodent reservoir in foci of endemic plague in China. These resources enable in-depth studies of Y. pestis sequence variations and detailed whole-genome comparisons of very closely related genomes from the supposed site of the origin and the emergence of global pandemics of plague.

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Year:  2009        PMID： 19820101      PMCID： PMC2786597          DOI： 10.1128/JB.01227-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  24 in total

1.  Mauve: multiple alignment of conserved genomic sequence with rearrangements.

Authors:  Aaron C E Darling; Bob Mau; Frederick R Blattner; Nicole T Perna
Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

2.  Genetic variability of Yersinia pestis isolates as predicted by PCR-based IS100 genotyping and analysis of structural genes encoding glycerol-3-phosphate dehydrogenase (glpD).

Authors:  Vladimir L Motin; Anca M Georgescu; Jeffrey M Elliott; Ping Hu; Patricia L Worsham; Linda L Ott; Tomas R Slezak; Bahrad A Sokhansanj; Warren M Regala; Robert R Brubaker; Emilio Garcia
Journal:  J Bacteriol       Date:  2002-02       Impact factor: 3.490

3.  Diversity in a variable-number tandem repeat from Yersinia pestis.

Authors:  D M Adair; P L Worsham; K K Hill; A M Klevytska; P J Jackson; A M Friedlander; P Keim
Journal:  J Clin Microbiol       Date:  2000-04       Impact factor: 5.948

4.  Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome.

Authors:  A M Klevytska; L B Price; J M Schupp; P L Worsham; J Wong; P Keim
Journal:  J Clin Microbiol       Date:  2001-09       Impact factor: 5.948

5.  Conserved filamentous prophage in Escherichia coli O18:K1:H7 and Yersinia pestis biovar orientalis.

Authors:  Mark D Gonzalez; Carol A Lichtensteiger; Ruth Caughlan; Eric R Vimr
Journal:  J Bacteriol       Date:  2002-11       Impact factor: 3.490

6.  Genome sequence of Yersinia pestis, the causative agent of plague.

Authors:  J Parkhill; B W Wren; N R Thomson; R W Titball; M T Holden; M B Prentice; M Sebaihia; K D James; C Churcher; K L Mungall; S Baker; D Basham; S D Bentley; K Brooks; A M Cerdeño-Tárraga; T Chillingworth; A Cronin; R M Davies; P Davis; G Dougan; T Feltwell; N Hamlin; S Holroyd; K Jagels; A V Karlyshev; S Leather; S Moule; P C Oyston; M Quail; K Rutherford; M Simmonds; J Skelton; K Stevens; S Whitehead; B G Barrell
Journal:  Nature       Date:  2001-10-04       Impact factor: 49.962

7.  Genome sequence of Yersinia pestis KIM.

Authors:  Wen Deng; Valerie Burland; Guy Plunkett; Adam Boutin; George F Mayhew; Paul Liss; Nicole T Perna; Debra J Rose; Bob Mau; Shiguo Zhou; David C Schwartz; Jaqueline D Fetherston; Luther E Lindler; Robert R Brubaker; Gregory V Plano; Susan C Straley; Kathleen A McDonough; Matthew L Nilles; Jyl S Matson; Frederick R Blattner; Robert D Perry
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

8.  Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans.

Authors:  Yajun Song; Zongzhong Tong; Jin Wang; Li Wang; Zhaobiao Guo; Yanpin Han; Jianguo Zhang; Decui Pei; Dongsheng Zhou; Haiou Qin; Xin Pang; Yujun Han; Junhui Zhai; Min Li; Baizhong Cui; Zhizhen Qi; Lixia Jin; Ruixia Dai; Feng Chen; Shengting Li; Chen Ye; Zongmin Du; Wei Lin; Jun Wang; Jun Yu; Huanming Yang; Jian Wang; Peitang Huang; Ruifu Yang
Journal:  DNA Res       Date:  2004-06-30       Impact factor: 4.458

Review 9.  The yersiniae--a model genus to study the rapid evolution of bacterial pathogens.

Authors:  Brendan W Wren
Journal:  Nat Rev Microbiol       Date:  2003-10       Impact factor: 60.633

10.  Reordering contigs of draft genomes using the Mauve aligner.

Authors:  Anna I Rissman; Bob Mau; Bryan S Biehl; Aaron E Darling; Jeremy D Glasner; Nicole T Perna
Journal:  Bioinformatics       Date:  2009-06-10       Impact factor: 6.937
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  12 in total

1.  Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis.

Authors:  Yujun Cui; Chang Yu; Yanfeng Yan; Dongfang Li; Yanjun Li; Thibaut Jombart; Lucy A Weinert; Zuyun Wang; Zhaobiao Guo; Lizhi Xu; Yujiang Zhang; Hancheng Zheng; Nan Qin; Xiao Xiao; Mingshou Wu; Xiaoyi Wang; Dongsheng Zhou; Zhizhen Qi; Zongmin Du; Honglong Wu; Xianwei Yang; Hongzhi Cao; Hu Wang; Jing Wang; Shusen Yao; Alexander Rakin; Yingrui Li; Daniel Falush; Francois Balloux; Mark Achtman; Yajun Song; Jun Wang; Ruifu Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-27       Impact factor: 11.205

2.  Delineation and analysis of chromosomal regions specifying Yersinia pestis.

Authors:  Anne Derbise; Viviane Chenal-Francisque; Christèle Huon; Corinne Fayolle; Christian E Demeure; Béatrice Chane-Woon-Ming; Claudine Médigue; B Joseph Hinnebusch; Elisabeth Carniel
Journal:  Infect Immun       Date:  2010-07-06       Impact factor: 3.441

3.  A draft genome of Yersinia pestis from victims of the Black Death.

Authors:  Kirsten I Bos; Verena J Schuenemann; G Brian Golding; Hernán A Burbano; Nicholas Waglechner; Brian K Coombes; Joseph B McPhee; Sharon N DeWitte; Matthias Meyer; Sarah Schmedes; James Wood; David J D Earn; D Ann Herring; Peter Bauer; Hendrik N Poinar; Johannes Krause
Journal:  Nature       Date:  2011-10-12       Impact factor: 49.962

4.  Lovastatin protects against experimental plague in mice.

Authors:  Saravanan Ayyadurai; Hubert Lepidi; Claude Nappez; Didier Raoult; Michel Drancourt
Journal:  PLoS One       Date:  2010-06-02       Impact factor: 3.240

5.  Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium.

Authors:  Mark Eppinger; Patricia L Worsham; Mikeljon P Nikolich; David R Riley; Yinong Sebastian; Sherry Mou; Mark Achtman; Luther E Lindler; Jacques Ravel
Journal:  J Bacteriol       Date:  2010-01-08       Impact factor: 3.490

6.  Characterization of pPCP1 Plasmids in Yersinia pestis Strains Isolated from the Former Soviet Union.

Authors:  Chythanya Rajanna; Tamara Revazishvili; Mohammed H Rashid; Svetlana Chubinidze; Lela Bakanidze; Shota Tsanava; Paata Imnadze; Kimberly A Bishop-Lilly; Shanmuga Sozhamannan; Henry S Gibbons; J Glenn Morris; Alexander Sulakvelidze
Journal:  Int J Microbiol       Date:  2010-12-20

7.  Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity.

Authors:  Giovanna Morelli; Yajun Song; Camila J Mazzoni; Mark Eppinger; Philippe Roumagnac; David M Wagner; Mirjam Feldkamp; Barica Kusecek; Amy J Vogler; Yanjun Li; Yujun Cui; Nicholas R Thomson; Thibaut Jombart; Raphael Leblois; Peter Lichtner; Lila Rahalison; Jeannine M Petersen; Francois Balloux; Paul Keim; Thierry Wirth; Jacques Ravel; Ruifu Yang; Elisabeth Carniel; Mark Achtman
Journal:  Nat Genet       Date:  2010-10-31       Impact factor: 38.330

8.  Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar.

Authors:  Amy J Vogler; Fabien Chan; David M Wagner; Philippe Roumagnac; Judy Lee; Roxanne Nera; Mark Eppinger; Jacques Ravel; Lila Rahalison; Bruno W Rasoamanana; Stephen M Beckstrom-Sternberg; Mark Achtman; Suzanne Chanteau; Paul Keim
Journal:  PLoS Negl Trop Dis       Date:  2011-09-13

9.  Novel plasmids and resistance phenotypes in Yersinia pestis: unique plasmid inventory of strain Java 9 mediates high levels of arsenic resistance.

Authors:  Mark Eppinger; Lyndsay Radnedge; Gary Andersen; Nicholas Vietri; Grant Severson; Sherry Mou; Jacques Ravel; Patricia L Worsham
Journal:  PLoS One       Date:  2012-03-30       Impact factor: 3.240

10.  Detection of a Yersinia pestis gene homologue in rodent samples.

Authors:  Timothy A Giles; Alex D Greenwood; Kyriakos Tsangaras; Tom C Giles; Paul A Barrow; Duncan Hannant; Abu-Bakr Abu-Median; Lisa Yon
Journal:  PeerJ       Date:  2016-08-17       Impact factor: 2.984
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