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Literature DB >> 19810318

Parallel tempering: theory, applications, and new perspectives.

Abstract

We review the history of the parallel tempering simulation method. From its origins in data analysis, the parallel tempering method has become a standard workhorse of physicochemical simulations. We discuss the theory behind the method and its various generalizations. We mention a selected set of the many applications that have become possible with the introduction of parallel tempering, and we suggest several promising avenues for future research.

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Year: 2005 PMID： 19810318 DOI： 10.1039/b509983h

Source DB: PubMed Journal: Phys Chem Chem Phys ISSN： 1463-9076 Impact factor: 3.676

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Cited

132 in total

1. Langevin dynamics simulation of polymer-assisted virus-like assembly.

Authors: J P Mahalik; M Muthukumar
Journal: J Chem Phys Date: 2012-04-07 Impact factor: 3.488

2. Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis.

Authors: Timothy Nugent; David T Jones
Journal: Proc Natl Acad Sci U S A Date: 2012-05-29 Impact factor: 11.205

Parallel tempering: theory, applications, and new perspectives.

1. Langevin dynamics simulation of polymer-assisted virus-like assembly.

2. Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis.

3. Monte Carlo phase diagram for diblock copolymer melts.

4. Generalized replica exchange method.

5. Simulations of thermodynamics and kinetics on rough energy landscapes with milestoning.

6. Turning statistical physics models into materials design engines.

7. Oxidation-induced destabilization of the fibrinogen αC-domain dimer investigated by molecular dynamics simulations.

8. Efficient Algorithms for Searching the Minimum Information Partition in Integrated Information Theory.

9. Parameter Estimation and Uncertainty Quantification for Systems Biology Models.

10. In silico protein fragmentation reveals the importance of critical nuclei on domain reassembly.