Literature DB >> 19809600

Singular perturbation analysis of the steady-state Poisson-Nernst-Planck system: Applications to ion channels.

A Singer1, D Gillespie, J Norbury, R S Eisenberg.   

Abstract

Ion channels are proteins with a narrow hole down their middle that control a wide range of biological function by controlling the flow of spherical ions from one macroscopic region to another. Ion channels do not change their conformation on the biological time scale once they are open, so they can be described by a combination of Poisson and drift-diffusion (Nernst-Planck) equations called PNP in biophysics. We use singular perturbation techniques to analyse the steady-state PNP system for a channel with a general geometry and a piecewise constant permanent charge profile. We construct an outer solution for the case of a constant permanent charge density in three dimensions that is also a valid solution of the one-dimensional system. The asymptotical current-voltage (I-V ) characteristic curve of the device (obtained by the singular perturbation analysis) is shown to be a very good approximation of the numerical I-V curve (obtained by solving the system numerically). The physical constraint of non-negative concentrations implies a unique solution, i.e., for each given applied potential there corresponds a unique electric current (relaxing this constraint yields non-physical multiple solutions for sufficiently large voltages).

Year:  2008        PMID: 19809600      PMCID: PMC2756831          DOI: 10.1017/S0956792508007596

Source DB:  PubMed          Journal:  Eur J Appl Math        ISSN: 0956-7925            Impact factor:   1.413


  10 in total

1.  Derivation of Poisson and Nernst-Planck equations in a bath and channel from a molecular model.

Authors:  Z Schuss; B Nadler; R S Eisenberg
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-08-28

2.  Binding and selectivity in L-type calcium channels: a mean spherical approximation.

Authors:  W Nonner; L Catacuzzeno; B Eisenberg
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

3.  Negative incremental resistance induced by calcium in asymmetric nanopores.

Authors:  Zuzanna S Siwy; Matthew R Powell; Eric Kalman; R Dean Astumian; Robert S Eisenberg
Journal:  Nano Lett       Date:  2006-03       Impact factor: 11.189

Review 4.  Voltage-dependent gating of ionic channels.

Authors:  F Bezanilla; E Stefani
Journal:  Annu Rev Biophys Biomol Struct       Date:  1994

5.  A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer.

Authors:  D P Tieleman; H J Berendsen
Journal:  Biophys J       Date:  1998-06       Impact factor: 4.033

6.  Dynamic properties of Na+ ions in models of ion channels: a molecular dynamics study.

Authors:  G R Smith; M S Sansom
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

7.  Ion permeation and glutamate residues linked by Poisson-Nernst-Planck theory in L-type calcium channels.

Authors:  W Nonner; B Eisenberg
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

8.  Calcium-induced voltage gating in single conical nanopores.

Authors:  Zuzanna S Siwy; Matthew R Powell; Alexander Petrov; Eric Kalman; Christina Trautmann; Robert S Eisenberg
Journal:  Nano Lett       Date:  2006-08       Impact factor: 11.189

9.  Gating currents of the sodium channels: three ways to block them.

Authors:  F Bezanilla; C M Armstrong
Journal:  Science       Date:  1974-02-22       Impact factor: 47.728

10.  (De)constructing the ryanodine receptor: modeling ion permeation and selectivity of the calcium release channel.

Authors:  Dirk Gillespie; Le Xu; Ying Wang; Gerhard Meissner
Journal:  J Phys Chem B       Date:  2005-08-18       Impact factor: 2.991

  10 in total
  7 in total

1.  Quantum dynamics in continuum for proton transport--generalized correlation.

Authors:  Duan Chen; Guo-Wei Wei
Journal:  J Chem Phys       Date:  2012-04-07       Impact factor: 3.488

2.  Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids.

Authors:  Bob Eisenberg; Yunkyong Hyon; Chun Liu
Journal:  J Chem Phys       Date:  2010-09-14       Impact factor: 3.488

3.  Enhancement of charged macromolecule capture by nanopores in a salt gradient.

Authors:  Tom Chou
Journal:  J Chem Phys       Date:  2009-07-21       Impact factor: 3.488

Review 4.  Interacting ions in biophysics: real is not ideal.

Authors:  Bob Eisenberg
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

5.  Multiscale Multiphysics and Multidomain Models I: Basic Theory.

Authors:  Guo-Wei Wei
Journal:  J Theor Comput Chem       Date:  2013-12       Impact factor: 0.939

6.  Variational multiscale models for charge transport.

Authors:  Guo-Wei Wei; Qiong Zheng; Zhan Chen; Kelin Xia
Journal:  SIAM Rev Soc Ind Appl Math       Date:  2012-11-08       Impact factor: 10.780

7.  Competition between Cations via Classical Poisson-Nernst-Planck Models with Nonzero but Small Permanent Charges.

Authors:  Mingji Zhang
Journal:  Membranes (Basel)       Date:  2021-03-26
  7 in total

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