Literature DB >> 19804873

Insertional chromatin immunoprecipitation: a method for isolating specific genomic regions.

Akemi Hoshino1, Hodaka Fujii.   

Abstract

We established a novel method, insertional chromatin immunoprecipitation (iChIP), for isolation of specific genomic regions. In iChIP, specific genomic domains are immunoprecipitated with antibody against a tag, which is fused to the DNA-binding domain of an exogenous DNA-binding protein, whose recognition sequence is inserted into the genomic domains of interest. The iChIP method will be a useful tool for dissecting chromatin structure of genomic region of interest.

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Year:  2009        PMID: 19804873     DOI: 10.1016/j.jbiosc.2009.05.005

Source DB:  PubMed          Journal:  J Biosci Bioeng        ISSN: 1347-4421            Impact factor:   2.894


  23 in total

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Journal:  Nat Neurosci       Date:  2014-10-28       Impact factor: 24.884

Review 2.  Roles of repressive epigenetic machinery in lineage decision of T cells.

Authors:  Taku Naito; Ichiro Taniuchi
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3.  cgChIP: a cell type- and gene-specific method for chromatin analysis.

Authors:  Marios Agelopoulos; Daniel J McKay; Richard S Mann
Journal:  Methods Mol Biol       Date:  2014

4.  A CRISPR-based approach for proteomic analysis of a single genomic locus.

Authors:  Zachary J Waldrip; Stephanie D Byrum; Aaron J Storey; Jun Gao; Alicia K Byrd; Samuel G Mackintosh; Wayne P Wahls; Sean D Taverna; Kevin D Raney; Alan J Tackett
Journal:  Epigenetics       Date:  2014-07-18       Impact factor: 4.528

5.  Induction of H3K9me3 and DNA methylation by tethered heterochromatin factors in Neurospora crassa.

Authors:  Jordan D Gessaman; Eric U Selker
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-23       Impact factor: 11.205

6.  Coordinate control of gene expression noise and interchromosomal interactions in a MAP kinase pathway.

Authors:  Emma McCullagh; Anupama Seshan; Hana El-Samad; Hiten D Madhani
Journal:  Nat Cell Biol       Date:  2010-09-19       Impact factor: 28.824

7.  Chromatin enrichment for proteomics.

Authors:  Georg Kustatscher; Karen L H Wills; Cristina Furlan; Juri Rappsilber
Journal:  Nat Protoc       Date:  2014-08-07       Impact factor: 13.491

8.  SAMHD1-mediated dNTP degradation is required for efficient DNA repair during antibody class switch recombination.

Authors:  Afzal Husain; Jianliang Xu; Hodaka Fujii; Mikiyo Nakata; Maki Kobayashi; Ji-Yang Wang; Jan Rehwinkel; Tasuku Honjo; Nasim A Begum
Journal:  EMBO J       Date:  2020-06-08       Impact factor: 11.598

9.  Direct identification of insulator components by insertional chromatin immunoprecipitation.

Authors:  Toshitsugu Fujita; Hodaka Fujii
Journal:  PLoS One       Date:  2011-10-17       Impact factor: 3.240

Review 10.  Locus-specific biochemical epigenetics/chromatin biochemistry by insertional chromatin immunoprecipitation.

Authors:  Toshitsugu Fujita; Hodaka Fujii
Journal:  ISRN Biochem       Date:  2013-01-10
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