Literature DB >> 19802558

An overview of the molecular mechanism of autophagy.

Zhifen Yang1, Daniel J Klionsky.   

Abstract

Autophagy is a highly conserved cellular degradation process in which portions of cytosol and organelles are sequestered into a double-membrane vesicle, an autophagosome, and delivered into a degradative organelle, the vacuole/lysosome, for breakdown and eventual recycling of the resulting macromolecules. This process relieves the cell from various stress conditions. Autophagy plays a critical role during cellular development and differentiation, functions in tumor suppression, and may be linked to life span extension. Autophagy also has diverse roles in innate and adaptive immunity, such as resistance to pathogen invasion. Substantial progress has been made in the identification of many autophagy-related (ATG) genes that are essential to drive this cellular process, including both selective and nonselective types of autophagy. Identification of the ATG genes in yeast, and the finding of orthologs in other organisms, reveals the conservation of the autophagic machinery in all eukaryotes. Here, we summarize our current knowledge about the machinery and molecular mechanism of autophagy.

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Mesh:

Year:  2009        PMID: 19802558      PMCID: PMC2832191          DOI: 10.1007/978-3-642-00302-8_1

Source DB:  PubMed          Journal:  Curr Top Microbiol Immunol        ISSN: 0070-217X            Impact factor:   4.291


  155 in total

Review 1.  Development by self-digestion: molecular mechanisms and biological functions of autophagy.

Authors:  Beth Levine; Daniel J Klionsky
Journal:  Dev Cell       Date:  2004-04       Impact factor: 12.270

2.  Ras is involved in the negative control of autophagy through the class I PI3-kinase.

Authors:  Shuichi Furuta; Eiko Hidaka; Aya Ogata; Sadaki Yokota; Tohru Kamata
Journal:  Oncogene       Date:  2004-05-13       Impact factor: 9.867

3.  The Ras/cAMP-dependent protein kinase signaling pathway regulates an early step of the autophagy process in Saccharomyces cerevisiae.

Authors:  Yelena V Budovskaya; Joseph S Stephan; Fulvio Reggiori; Daniel J Klionsky; Paul K Herman
Journal:  J Biol Chem       Date:  2004-03-11       Impact factor: 5.157

4.  PpAtg30 tags peroxisomes for turnover by selective autophagy.

Authors:  Jean-Claude Farré; Ravi Manjithaya; Richard D Mathewson; Suresh Subramani
Journal:  Dev Cell       Date:  2008-03       Impact factor: 12.270

5.  Organization of the pre-autophagosomal structure responsible for autophagosome formation.

Authors:  Tomoko Kawamata; Yoshiaki Kamada; Yukiko Kabeya; Takayuki Sekito; Yoshinori Ohsumi
Journal:  Mol Biol Cell       Date:  2008-02-20       Impact factor: 4.138

6.  Early stages of the secretory pathway, but not endosomes, are required for Cvt vesicle and autophagosome assembly in Saccharomyces cerevisiae.

Authors:  Fulvio Reggiori; Chao-Wen Wang; Usha Nair; Takahiro Shintani; Hagai Abeliovich; Daniel J Klionsky
Journal:  Mol Biol Cell       Date:  2004-03-05       Impact factor: 4.138

7.  Dictyostelium macroautophagy mutants vary in the severity of their developmental defects.

Authors:  Grant P Otto; Mary Y Wu; Nevzat Kazgan; O Roger Anderson; Richard H Kessin
Journal:  J Biol Chem       Date:  2004-01-21       Impact factor: 5.157

8.  Ald6p is a preferred target for autophagy in yeast, Saccharomyces cerevisiae.

Authors:  Jun Onodera; Yoshinori Ohsumi
Journal:  J Biol Chem       Date:  2004-02-04       Impact factor: 5.157

9.  PtdIns-specific MPR pathway association of a novel WD40 repeat protein, WIPI49.

Authors:  Tim R Jeffries; Stephen K Dove; Robert H Michell; Peter J Parker
Journal:  Mol Biol Cell       Date:  2004-03-12       Impact factor: 4.138

10.  LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation.

Authors:  Yukiko Kabeya; Noboru Mizushima; Akitsugu Yamamoto; Satsuki Oshitani-Okamoto; Yoshinori Ohsumi; Tamotsu Yoshimori
Journal:  J Cell Sci       Date:  2004-06-01       Impact factor: 5.285

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  303 in total

Review 1.  Roles for the ubiquitin-proteasome pathway in protein quality control and signaling in the retina: implications in the pathogenesis of age-related macular degeneration.

Authors:  Fu Shang; Allen Taylor
Journal:  Mol Aspects Med       Date:  2012-04-10

Review 2.  Degradation of connexins through the proteasomal, endolysosomal and phagolysosomal pathways.

Authors:  Vivian Su; Kimberly Cochrane; Alan F Lau
Journal:  J Membr Biol       Date:  2012-07-08       Impact factor: 1.843

Review 3.  Selective degradation of p62 by autophagy.

Authors:  Yoshinobu Ichimura; Masaaki Komatsu
Journal:  Semin Immunopathol       Date:  2010-09-03       Impact factor: 9.623

4.  Rapamycin activates autophagy and improves myelination in explant cultures from neuropathic mice.

Authors:  Sunitha Rangaraju; Jonathan D Verrier; Irina Madorsky; Jessica Nicks; William A Dunn; Lucia Notterpek
Journal:  J Neurosci       Date:  2010-08-25       Impact factor: 6.167

Review 5.  The autophagic tumor stroma model of cancer or "battery-operated tumor growth": A simple solution to the autophagy paradox.

Authors:  Ubaldo E Martinez-Outschoorn; Diana Whitaker-Menezes; Stephanos Pavlides; Barbara Chiavarina; Gloria Bonuccelli; Trimmer Casey; Aristotelis Tsirigos; Gemma Migneco; Agnieszka Witkiewicz; Renee Balliet; Isabelle Mercier; Chengwang Wang; Neal Flomenberg; Anthony Howell; Zhao Lin; Jaime Caro; Richard G Pestell; Federica Sotgia; Michael P Lisanti
Journal:  Cell Cycle       Date:  2010-11-30       Impact factor: 4.534

Review 6.  Autophagy in protists.

Authors:  Michael Duszenko; Michael L Ginger; Ana Brennand; Melisa Gualdrón-López; María Isabel Colombo; Graham H Coombs; Isabelle Coppens; Bamini Jayabalasingham; Gordon Langsley; Solange Lisboa de Castro; Rubem Menna-Barreto; Jeremy C Mottram; Miguel Navarro; Daniel J Rigden; Patricia S Romano; Veronika Stoka; Boris Turk; Paul A M Michels
Journal:  Autophagy       Date:  2011-02-01       Impact factor: 16.016

Review 7.  Integration of clearance mechanisms: the proteasome and autophagy.

Authors:  Esther Wong; Ana Maria Cuervo
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-11-10       Impact factor: 10.005

Review 8.  Autophagy and adaptive immunity.

Authors:  Victoria L Crotzer; Janice S Blum
Journal:  Immunology       Date:  2010-06-25       Impact factor: 7.397

9.  Trs20 is required for TRAPP III complex assembly at the PAS and its function in autophagy.

Authors:  David Taussig; Zhanna Lipatova; Nava Segev
Journal:  Traffic       Date:  2014-01-14       Impact factor: 6.215

10.  Autophagy promotes radiation-induced senescence but inhibits bystander effects in human breast cancer cells.

Authors:  Yao-Huei Huang; Pei-Ming Yang; Qiu-Yu Chuah; Yi-Jang Lee; Yi-Fen Hsieh; Chih-Wen Peng; Shu-Jun Chiu
Journal:  Autophagy       Date:  2014-04-30       Impact factor: 16.016

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