Literature DB >> 19802366

Compensated optimal grids for elliptic boundary-value problems.

F Posta1, S Y Shvartsman, C B Muratov.   

Abstract

A method is proposed which allows to efficiently treat elliptic problems on unbounded domains in two and three spatial dimensions in which one is only interested in obtaining accurate solutions at the domain boundary. The method is an extension of the optimal grid approach for elliptic problems, based on optimal rational approximation of the associated Neumann-to-Dirichlet map in Fourier space. It is shown that, using certain types of boundary discretization, one can go from second-order accurate schemes to essentially spectrally accurate schemes in two-dimensional problems, and to fourth-order accurate schemes in three-dimensional problems without any increase in the computational complexity. The main idea of the method is to modify the impedance function being approximated to compensate for the numerical dispersion introduced by a small finite-difference stencil discretizing the differential operator on the boundary. We illustrate how the method can be efficiently applied to nonlinear problems arising in modeling of cell communication.

Entities:  

Year:  2008        PMID: 19802366      PMCID: PMC2717561          DOI: 10.1016/j.jcp.2008.06.026

Source DB:  PubMed          Journal:  J Comput Phys        ISSN: 0021-9991            Impact factor:   3.553


  9 in total

Review 1.  Feedback control of intercellular signalling in development.

Authors:  M Freeman
Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

2.  Discrete models of autocrine cell communication in epithelial layers.

Authors:  Michal Pribyl; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

3.  Sheet excitability and nonlinear wave propagation.

Authors:  Bernardo Pando; John E Pearson; Silvina Ponce Dawson
Journal:  Phys Rev Lett       Date:  2003-12-16       Impact factor: 9.161

4.  Long-range signal transmission in autocrine relays.

Authors:  Michal Pribyl; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

Review 5.  Regulatory principles of developmental signaling.

Authors:  M Freeman; J B Gurdon
Journal:  Annu Rev Cell Dev Biol       Date:  2002-04-02       Impact factor: 13.827

6.  Signal propagation and failure in discrete autocrine relays.

Authors:  Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  Phys Rev Lett       Date:  2004-09-10       Impact factor: 9.161

Review 7.  Quantitative models of developmental pattern formation.

Authors:  Gregory T Reeves; Cyrill B Muratov; Trudi Schüpbach; Stanislav Y Shvartsman
Journal:  Dev Cell       Date:  2006-09       Impact factor: 12.270

Review 8.  Gene regulation: gene control network in development.

Authors:  Smadar Ben-Tabou de-Leon; Eric H Davidson
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

9.  Drosophila eggshell is patterned by sequential action of feedforward and feedback loops.

Authors:  Nir Yakoby; Jessica Lembong; Trudi Schüpbach; Stanislav Y Shvartsman
Journal:  Development       Date:  2007-12-12       Impact factor: 6.868

  9 in total
  1 in total

1.  A mathematical model of intercellular signaling during epithelial wound healing.

Authors:  Filippo Posta; Tom Chou
Journal:  J Theor Biol       Date:  2010-06-02       Impact factor: 2.691

  1 in total

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