Literature DB >> 1979857

Cosmid walking and chromosome jumping in the region of PKD1 reveal a locus duplication and three CpG islands.

G A Gillespie1, G G Germino, S Somlo, D Weinstat-Saslow, M H Breuning, S T Reeders.   

Abstract

The locus responsible for the most common form of autosomal dominant polycystic kidney disease (PKD1) is located on chromosome 16p13.3. Genetic mapping studies indicate that PKD1 is flanked on the proximal side by the DNA marker 26.6 (D16S125). Here we show that 26.6 has undergone a locus duplication and that the two loci are less than 150kb apart. One of the two loci contains a polymorphic TaqI site that has been used in genetic studies and represents the proximal boundary for the PKD1 locus. We demonstrate that the polymorphic locus is the more proximal of the two 26.6-hybridizing loci. Therefore, four cosmids isolated from the distal 26.6-hybridizing locus contain candidate sequences for the PKD1 gene. These cosmids were found to contain two CpG islands that are likely markers for transcribed regions. A third CpG island was detected and cloned by directional chromosome jumping.

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Year:  1990        PMID: 1979857      PMCID: PMC332771          DOI: 10.1093/nar/18.23.7071

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  13 in total

1.  A TaqI polymorphism identified by 26-6 (D16S125) proximal to the locus affecting adult polycystic kidney disease (PKD1) on chromosome 16.

Authors:  M H Breuning; F G Snijdewint; J R Smits; J G Dauwerse; J J Saris; G J van Ommen
Journal:  Nucleic Acids Res       Date:  1990-05-25       Impact factor: 16.971

2.  Strategies for mapping and cloning macroregions of mammalian genomes.

Authors:  C L Smith; S K Lawrance; G A Gillespie; C R Cantor; S M Weissman; F S Collins
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

3.  Cosmid vectors for genomic walking and rapid restriction mapping.

Authors:  G A Evans; G M Wahl
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

4.  Construction of a general human chromosome jumping library, with application to cystic fibrosis.

Authors:  F S Collins; M L Drumm; J L Cole; W K Lockwood; G F Vande Woude; M C Iannuzzi
Journal:  Science       Date:  1987-02-27       Impact factor: 47.728

5.  Charon phages: safer derivatives of bacteriophage lambda for DNA cloning.

Authors:  F R Blattner; B G Williams; A E Blechl; K Denniston-Thompson; H E Faber; L Furlong; D J Grunwald; D O Kiefer; D D Moore; J W Schumm; E L Sheldon; O Smithies
Journal:  Science       Date:  1977-04-08       Impact factor: 47.728

6.  A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.

Authors:  A P Feinberg; B Vogelstein
Journal:  Anal Biochem       Date:  1983-07-01       Impact factor: 3.365

7.  Construction and use of human chromosome jumping libraries from NotI-digested DNA.

Authors:  A Poustka; T M Pohl; D P Barlow; A M Frischauf; H Lehrach
Journal:  Nature       Date:  1987 Jan 22-28       Impact factor: 49.962

8.  Linkage heterogeneity of autosomal dominant polycystic kidney disease.

Authors:  W J Kimberling; P R Fain; J B Kenyon; D Goldgar; E Sujansky; P A Gabow
Journal:  N Engl J Med       Date:  1988-10-06       Impact factor: 91.245

9.  A highly polymorphic DNA marker linked to adult polycystic kidney disease on chromosome 16.

Authors:  S T Reeders; M H Breuning; K E Davies; R D Nicholls; A P Jarman; D R Higgs; P L Pearson; D J Weatherall
Journal:  Nature       Date:  1985 Oct 10-16       Impact factor: 49.962

10.  Use of restriction enzymes to detect potential gene sequences in mammalian DNA.

Authors:  S Lindsay; A P Bird
Journal:  Nature       Date:  1987 May 28-Jun 3       Impact factor: 49.962

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  2 in total

1.  Rubinstein-Taybi syndrome caused by submicroscopic deletions within 16p13.3.

Authors:  M H Breuning; H G Dauwerse; G Fugazza; J J Saris; L Spruit; H Wijnen; N Tommerup; C B van der Hagen; K Imaizumi; Y Kuroki; M J van den Boogaard; J M de Pater; E C Mariman; B C Hamel; H Himmelbauer; A M Frischauf; R Stallings; G C Beverstock; G J van Ommen; R C Hennekam
Journal:  Am J Hum Genet       Date:  1993-02       Impact factor: 11.025

2.  CpG island in the region of an autosomal dominant polycystic kidney disease locus defines the 5' end of a gene encoding a putative proton channel.

Authors:  G A Gillespie; S Somlo; G G Germino; D Weinstat-Saslow; S T Reeders
Journal:  Proc Natl Acad Sci U S A       Date:  1991-05-15       Impact factor: 11.205

  2 in total

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