Literature DB >> 19797272

Human-specific genes may offer a unique window into human cell signaling.

Philip D Stahl1, Marisa J Wainszelbaum.   

Abstract

The identification and characterization of human-specific genes and the cellular processes that the encoded proteins control have the potential to help us understand at the molecular level what makes humans different from other species. The sequencing of the human genome and the genomes of closely related primates has revealed the presence of a small number of human- or human-lineage-specific genes that have no orthologs in lower species. Human-specific and human-lineage-specific genes are likely to function as regulators of cell signaling events, and by fine-tuning pathways, the encoded proteins may contribute to human-specific characteristics and behaviors. In addition, human-specific genes may represent biomarkers for examining human-specific characteristics of various diseases. Investigation of the gene encoding TBC1D3 is one example of a search that may lead to understanding the evolution and the function of human-specific genes, because it is absent in lower species and present in high copy number in the human genome.

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Year:  2009        PMID: 19797272      PMCID: PMC3668639          DOI: 10.1126/scisignal.289pe59

Source DB:  PubMed          Journal:  Sci Signal        ISSN: 1945-0877            Impact factor:   8.192


  24 in total

Review 1.  The search for new cardiovascular biomarkers.

Authors:  Robert E Gerszten; Thomas J Wang
Journal:  Nature       Date:  2008-02-21       Impact factor: 49.962

2.  The primate-specific protein TBC1D3 is required for optimal macropinocytosis in a novel ARF6-dependent pathway.

Authors:  Emanuela Frittoli; Andrea Palamidessi; Alessandro Pizzigoni; Letizia Lanzetti; Massimiliano Garrè; Flavia Troglio; Albino Troilo; Mitsunori Fukuda; Pier Paolo Di Fiore; Giorgio Scita; Stefano Confalonieri
Journal:  Mol Biol Cell       Date:  2008-01-16       Impact factor: 4.138

3.  Copy number variation at 1q21.1 associated with neuroblastoma.

Authors:  Sharon J Diskin; Cuiping Hou; Joseph T Glessner; Edward F Attiyeh; Marci Laudenslager; Kristopher Bosse; Kristina Cole; Yaël P Mossé; Andrew Wood; Jill E Lynch; Katlyn Pecor; Maura Diamond; Cynthia Winter; Kai Wang; Cecilia Kim; Elizabeth A Geiger; Patrick W McGrady; Alexandra I F Blakemore; Wendy B London; Tamim H Shaikh; Jonathan Bradfield; Struan F A Grant; Hongzhe Li; Marcella Devoto; Eric R Rappaport; Hakon Hakonarson; John M Maris
Journal:  Nature       Date:  2009-06-18       Impact factor: 49.962

Review 4.  Explaining human uniqueness: genome interactions with environment, behaviour and culture.

Authors:  Ajit Varki; Daniel H Geschwind; Evan E Eichler
Journal:  Nat Rev Genet       Date:  2008-10       Impact factor: 53.242

Review 5.  Mapping the human protein interactome.

Authors:  Daniel Figeys
Journal:  Cell Res       Date:  2008-07       Impact factor: 25.617

6.  Relative impact of nucleotide and copy number variation on gene expression phenotypes.

Authors:  Barbara E Stranger; Matthew S Forrest; Mark Dunning; Catherine E Ingle; Claude Beazley; Natalie Thorne; Richard Redon; Christine P Bird; Anna de Grassi; Charles Lee; Chris Tyler-Smith; Nigel Carter; Stephen W Scherer; Simon Tavaré; Panagiotis Deloukas; Matthew E Hurles; Emmanouil T Dermitzakis
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

7.  The hominoid-specific oncogene TBC1D3 activates Ras and modulates epidermal growth factor receptor signaling and trafficking.

Authors:  Marisa J Wainszelbaum; Audra J Charron; Chen Kong; Donald S Kirkpatrick; Priya Srikanth; M Alejandro Barbieri; Steven P Gygi; Philip D Stahl
Journal:  J Biol Chem       Date:  2008-03-04       Impact factor: 5.157

8.  Copy number variation and evolution in humans and chimpanzees.

Authors:  George H Perry; Fengtang Yang; Tomas Marques-Bonet; Carly Murphy; Tomas Fitzgerald; Arthur S Lee; Courtney Hyland; Anne C Stone; Matthew E Hurles; Chris Tyler-Smith; Evan E Eichler; Nigel P Carter; Charles Lee; Richard Redon
Journal:  Genome Res       Date:  2008-09-04       Impact factor: 9.043

9.  Novel retinal and cone photoreceptor transcripts revealed by human macular expression profiling.

Authors:  Daniel M Hornan; Stuart N Peirson; Alison J Hardcastle; Robert S Molday; Michael E Cheetham; Andrew R Webster
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-12       Impact factor: 4.799

10.  Positive selection of a gene family during the emergence of humans and African apes.

Authors:  M E Johnson; L Viggiano; J A Bailey; M Abdul-Rauf; G Goodwin; M Rocchi; E E Eichler
Journal:  Nature       Date:  2001-10-04       Impact factor: 49.962

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  24 in total

1.  Gene inactivation and its implications for annotation in the era of personal genomics.

Authors:  Suganthi Balasubramanian; Lukas Habegger; Adam Frankish; Daniel G MacArthur; Rachel Harte; Chris Tyler-Smith; Jennifer Harrow; Mark Gerstein
Journal:  Genes Dev       Date:  2011-01-01       Impact factor: 11.361

2.  CHRFAM7A: a human-specific α7-nicotinic acetylcholine receptor gene shows differential responsiveness of human intestinal epithelial cells to LPS.

Authors:  Xitong Dang; Brian P Eliceiri; Andrew Baird; Todd W Costantini
Journal:  FASEB J       Date:  2015-02-13       Impact factor: 5.191

Review 3.  RNA-Seq: Improving Our Understanding of Retinal Biology and Disease.

Authors:  Michael H Farkas; Elizabeth D Au; Maria E Sousa; Eric A Pierce
Journal:  Cold Spring Harb Perspect Med       Date:  2015-02-26       Impact factor: 6.915

4.  A Human-Specific α7-Nicotinic Acetylcholine Receptor Gene in Human Leukocytes: Identification, Regulation and the Consequences of CHRFAM7A Expression.

Authors:  Todd W Costantini; Xitong Dang; Maryana V Yurchyshyna; Raul Coimbra; Brian P Eliceiri; Andrew Baird
Journal:  Mol Med       Date:  2015-04-03       Impact factor: 6.354

Review 5.  Intrinsic mechanisms of neuronal axon regeneration.

Authors:  Marcus Mahar; Valeria Cavalli
Journal:  Nat Rev Neurosci       Date:  2018-06       Impact factor: 34.870

6.  DNA Damage Response and Repair, DNA Methylation, and Cell Death in Human Neurons and Experimental Animal Neurons Are Different.

Authors:  Lee J Martin; Qing Chang
Journal:  J Neuropathol Exp Neurol       Date:  2018-07-01       Impact factor: 3.685

Review 7.  CHRFAM7A, a human-specific and partially duplicated α7-nicotinic acetylcholine receptor gene with the potential to specify a human-specific inflammatory response to injury.

Authors:  Todd W Costantini; Xitong Dang; Raul Coimbra; Brian P Eliceiri; Andrew Baird
Journal:  J Leukoc Biol       Date:  2014-12-03       Impact factor: 4.962

8.  Mice engrafted with human hematopoietic stem cells support a human myeloid cell inflammatory response in vivo.

Authors:  Andrew Baird; Chenliang Deng; Matthew H Eliceiri; Fatima Haghi; Xitong Dang; Raul Coimbra; Todd W Costantini; Bruce E Torbett; Brian P Eliceiri
Journal:  Wound Repair Regen       Date:  2016-10-04       Impact factor: 3.617

9.  Potential role of human-specific genes, human-specific microRNAs and human-specific non-coding regulatory RNAs in the pathogenesis of systemic sclerosis and Sjögren's syndrome.

Authors:  Sergio A Jimenez; Sonsoles Piera-Velazquez
Journal:  Autoimmun Rev       Date:  2013-05-15       Impact factor: 9.754

Review 10.  Genomically humanized mice: technologies and promises.

Authors:  Anny Devoy; Rosie K A Bunton-Stasyshyn; Victor L J Tybulewicz; Andrew J H Smith; Elizabeth M C Fisher
Journal:  Nat Rev Genet       Date:  2011-12-16       Impact factor: 53.242

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