Literature DB >> 19791402

Stabilization of very rare tautomers of uracil by an excess electron.

Rafał A Bachorz1, Janusz Rak, Maciej Gutowski.   

Abstract

We characterized valence-type and dipole-bound anionic states of uracil using various electronic structure methods. We found that the most stable anion is related to neither the canonical 2,4-dioxo nor a rare imino-hydroxy tautomer. Instead, it is related to an imino-oxo tautomer, in which the N1H proton is transferred to the C5 atom. This valence anion is characterized by an electron vertical detachment energy (VDE) of 1267 meV and it is adiabatically stable with respect to the canonical neutral by 3.93 kcal mol(-1). It is also more stable by 2.32 and 5.10 kcal mol(-1) than the dipole-bound and valence anion, respectively, of the canonical tautomer. The VDE values for the former and the latter are 73 and 506 meV, respectively. Another, anionic, low-lying imino-oxo tautomer with a VDE of 2499 meV has a proton transferred from N3H to C5. It is less stable than the neutral canonical tautomer by 1.38 kcal mol(-1). The mechanism of formation of anionic tautomers with the carbon C5 protonated may involve intermolecular proton transfer or dissociative electron attachment to the canonical neutral tautomer followed by a barrier-free attachment of a hydrogen atom to C5. The six-member ring structure of anionic tautomers with carbon atoms protonated might be unstable upon an excess electron detachment. Indeed, the neutral systems resulting from electron detachment from anionic tautomers with carbon atoms protonated evolve along barrier-free decomposition pathways to a linear or a bicyclo structure, which might be viewed as lesions to RNA. Within the PCM hydration model, the low-lying valence anions become adiabatically bound with respect to the canonical neutral and the two most stable tautomers have carbon atoms protonated.

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Year:  2005        PMID: 19791402     DOI: 10.1039/b503745j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  7 in total

1.  Solvation free energies of molecules. The most stable anionic tautomers of uracil.

Authors:  Maciej Haranczyk; Maciej Gutowski; Arieh Warshel
Journal:  Phys Chem Chem Phys       Date:  2008-06-11       Impact factor: 3.676

2.  Combinatorial-computational-chemoinformatics (C3) approach to finding and analyzing low-energy tautomers.

Authors:  Maciej Haranczyk; Maciej Gutowski
Journal:  J Comput Aided Mol Des       Date:  2010-04-02       Impact factor: 3.686

3.  Photoelectron spectroscopic studies of 5-halouracil anions.

Authors:  Dunja Radisic; Yeon Jae Ko; John M Nilles; Sarah T Stokes; Michael D Sevilla; Janusz Rak; Kit H Bowen
Journal:  J Chem Phys       Date:  2011-01-07       Impact factor: 3.488

4.  Effect of the methylation of uracil and/or glycine on their mutual interaction.

Authors:  Hongqi Ai; Dejie Li; Yongping Zhao; Chong Zhang; Qiang Li; Jijun Feng
Journal:  J Mol Model       Date:  2011-05-20       Impact factor: 1.810

Review 5.  Progress in ab initio QM/MM free-energy simulations of electrostatic energies in proteins: accelerated QM/MM studies of pKa, redox reactions and solvation free energies.

Authors:  Shina C L Kamerlin; Maciej Haranczyk; Arieh Warshel
Journal:  J Phys Chem B       Date:  2009-02-05       Impact factor: 2.991

6.  Constant pH Molecular Dynamics Simulations of Nucleic Acids in Explicit Solvent.

Authors:  Garrett B Goh; Jennifer L Knight; Charles L Brooks
Journal:  J Chem Theory Comput       Date:  2012-01-10       Impact factor: 6.006

7.  Bound anionic states of adenine.

Authors:  Maciej Harańczyk; Maciej Gutowski; Xiang Li; Kit H Bowen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-12       Impact factor: 11.205

  7 in total

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