Literature DB >> 19789658

FORMATOMATIC: a program for converting diploid allelic data between common formats for population genetic analysis.

Nicholas C Manoukis1.   

Abstract

There has been a great increase in both the number of population genetic analysis programs and the size of data sets being studied with them. Since the file formats required by the most popular and useful programs are variable, automated reformatting or conversion between them is desirable. formatomatic is an easy to use program that can read allelic data files in genepop, raw (csv) or convert formats and create data files in nine formats: raw (csv), arlequin, genepop, immanc/bayesass +, migrate, newhybrids, msvar, baps and structure. Use of formatomatic should greatly reduce time spent reformatting data sets and avoid unnecessary errors.

Year:  2007        PMID： 19789658      PMCID： PMC2753541          DOI： 10.1111/j.1471-8286.2007.01784.x

Source DB:  PubMed          Journal:  Mol Ecol Notes        ISSN： 1471-8278


  9 in total

1.  Detecting population expansion and decline using microsatellites.

Authors:  M A Beaumont
Journal:  Genetics       Date:  1999-12       Impact factor: 4.562

2.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

3.  A model-based method for identifying species hybrids using multilocus genetic data.

Authors:  E C Anderson; E A Thompson
Journal:  Genetics       Date:  2002-03       Impact factor: 4.562

4.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

Authors:  Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

5.  BAPS 2: enhanced possibilities for the analysis of genetic population structure.

Authors:  Jukka Corander; Patrik Waldmann; Pekka Marttinen; Mikko J Sillanpää
Journal:  Bioinformatics       Date:  2004-04-08       Impact factor: 6.937

6.  Detecting immigration by using multilocus genotypes.

Authors:  B Rannala; J L Mountain
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-19       Impact factor: 11.205

7.  Comparison of Bayesian and maximum-likelihood inference of population genetic parameters.

Authors:  Peter Beerli
Journal:  Bioinformatics       Date:  2005-11-29       Impact factor: 6.937

Review 8.  Computer programs for population genetics data analysis: a survival guide.

Authors:  Laurent Excoffier; Gerald Heckel
Journal:  Nat Rev Genet       Date:  2006-08-22       Impact factor: 53.242

9.  Arlequin (version 3.0): an integrated software package for population genetics data analysis.

Authors:  Laurent Excoffier; Guillaume Laval; Stefan Schneider
Journal:  Evol Bioinform Online       Date:  2007-02-23       Impact factor: 1.625
  9 in total
  7 in total

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Journal:  Investig Genet       Date:  2011-02-01

2.  Influence of quaternary sea-level variations on a land bird endemic to Pacific atolls.

Authors:  Alice Cibois; Jean-Claude Thibault; Eric Pasquet
Journal:  Proc Biol Sci       Date:  2010-06-16       Impact factor: 5.349

3.  Mega2: validated data-reformatting for linkage and association analyses.

Authors:  Robert V Baron; Charles Kollar; Nandita Mukhopadhyay; Daniel E Weeks
Journal:  Source Code Biol Med       Date:  2014-12-05

4.  Speciation along a latitudinal gradient: The origin of the Neotropical cycad sister pair Dioon sonorense-D. vovidesii (Zamiaceae).

Authors:  José Said Gutiérrez-Ortega; Francisco Molina-Freaner; José F Martínez; Miguel Angel Pérez-Farrera; Andrew P Vovides; Antonio Hernández-López; Ayumi Tezuka; Atsushi J Nagano; Yasuyuki Watano; Yuma Takahashi; Masashi Murakami; Tadashi Kajita
Journal:  Ecol Evol       Date:  2021-05-01       Impact factor: 2.912

5.  Genetic structure and diversity of the endangered growling grass frog in a rapidly urbanizing region.

Authors:  Claire C Keely; Joshua M Hale; Geoffrey W Heard; Kirsten M Parris; Joanna Sumner; Andrew J Hamer; Jane Melville
Journal:  R Soc Open Sci       Date:  2015-08-26       Impact factor: 2.963

Review 6.  Microsatellites in Pursuit of Microbial Genome Evolution.

Authors:  Abdullah F Saeed; Rongzhi Wang; Shihua Wang
Journal:  Front Microbiol       Date:  2016-01-05       Impact factor: 5.640

7.  Population genetic structure of the deep-sea mussel Bathymodiolus platifrons (Bivalvia: Mytilidae) in the Northwest Pacific.

Authors:  Ting Xu; Jin Sun; Hiromi K Watanabe; Chong Chen; Masako Nakamura; Rubao Ji; Dong Feng; Jia Lv; Shi Wang; Zhenmin Bao; Pei-Yuan Qian; Jian-Wen Qiu
Journal:  Evol Appl       Date:  2018-10-12       Impact factor: 5.183
  7 in total

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