Literature DB >> 19789528

My5C: web tools for chromosome conformation capture studies.

Bryan R Lajoie, Nynke L van Berkum, Amartya Sanyal, Job Dekker.   

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Year:  2009        PMID： 19789528      PMCID： PMC2859197          DOI： 10.1038/nmeth1009-690

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  5 in total

1.  Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Authors:  Paul Shannon; Andrew Markiel; Owen Ozier; Nitin S Baliga; Jonathan T Wang; Daniel Ramage; Nada Amin; Benno Schwikowski; Trey Ideker
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

2.  The three 'C' s of chromosome conformation capture: controls, controls, controls.

Authors:  Job Dekker
Journal:  Nat Methods       Date:  2006-01       Impact factor: 28.547

3.  Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Authors:  Josée Dostie; Todd A Richmond; Ramy A Arnaout; Rebecca R Selzer; William L Lee; Tracey A Honan; Eric D Rubio; Anton Krumm; Justin Lamb; Chad Nusbaum; Roland D Green; Job Dekker
Journal:  Genome Res       Date:  2006-09-05       Impact factor: 9.043

Review 4.  An evaluation of 3C-based methods to capture DNA interactions.

Authors:  Marieke Simonis; Jurgen Kooren; Wouter de Laat
Journal:  Nat Methods       Date:  2007-11       Impact factor: 28.547

5.  Capturing chromosome conformation.

Authors:  Job Dekker; Karsten Rippe; Martijn Dekker; Nancy Kleckner
Journal:  Science       Date:  2002-02-15       Impact factor: 47.728
  5 in total
  47 in total

1.  Integrating one-dimensional and three-dimensional maps of genomes.

Authors:  Natalia Naumova; Job Dekker
Journal:  J Cell Sci       Date:  2010-06-15       Impact factor: 5.285

Review 2.  Structure determination of genomic domains by satisfaction of spatial restraints.

Authors:  Davide Baù; Marc A Marti-Renom
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

3.  Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus.

Authors:  Emily M Smith; Bryan R Lajoie; Gaurav Jain; Job Dekker
Journal:  Am J Hum Genet       Date:  2016-01-07       Impact factor: 11.025

4.  CBFβ-SMMHC Inhibition Triggers Apoptosis by Disrupting MYC Chromatin Dynamics in Acute Myeloid Leukemia.

Authors:  John Anto Pulikkan; Mahesh Hegde; Hafiz Mohd Ahmad; Houda Belaghzal; Anuradha Illendula; Jun Yu; Kelsey O'Hagan; Jianhong Ou; Carsten Muller-Tidow; Scot A Wolfe; Lihua Julie Zhu; Job Dekker; John Hackett Bushweller; Lucio Hernán Castilla
Journal:  Cell       Date:  2018-06-28       Impact factor: 41.582

5.  Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation.

Authors:  Sharmistha Kundu; Fei Ji; Hongjae Sunwoo; Gaurav Jain; Jeannie T Lee; Ruslan I Sadreyev; Job Dekker; Robert E Kingston
Journal:  Mol Cell       Date:  2017-02-02       Impact factor: 17.970

Review 6.  Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.

Authors:  Job Dekker; Marc A Marti-Renom; Leonid A Mirny
Journal:  Nat Rev Genet       Date:  2013-05-09       Impact factor: 53.242

7.  HiTC: exploration of high-throughput 'C' experiments.

Authors:  Nicolas Servant; Bryan R Lajoie; Elphège P Nora; Luca Giorgetti; Chong-Jian Chen; Edith Heard; Job Dekker; Emmanuel Barillot
Journal:  Bioinformatics       Date:  2012-08-24       Impact factor: 6.937

Review 8.  Chromosome conformation capture technologies and their impact in understanding genome function.

Authors:  Satish Sati; Giacomo Cavalli
Journal:  Chromosoma       Date:  2016-04-30       Impact factor: 4.316

9.  The Conformation of Yeast Chromosome III Is Mating Type Dependent and Controlled by the Recombination Enhancer.

Authors:  Jon-Matthew Belton; Bryan R Lajoie; Sylvain Audibert; Sylvain Cantaloube; Imen Lassadi; Isabelle Goiffon; Davide Baù; Marc A Marti-Renom; Kerstin Bystricky; Job Dekker
Journal:  Cell Rep       Date:  2015-11-19       Impact factor: 9.423

10.  Architectural protein subclasses shape 3D organization of genomes during lineage commitment.

Authors:  Jennifer E Phillips-Cremins; Michael E G Sauria; Amartya Sanyal; Tatiana I Gerasimova; Bryan R Lajoie; Joshua S K Bell; Chin-Tong Ong; Tracy A Hookway; Changying Guo; Yuhua Sun; Michael J Bland; William Wagstaff; Stephen Dalton; Todd C McDevitt; Ranjan Sen; Job Dekker; James Taylor; Victor G Corces
Journal:  Cell       Date:  2013-05-23       Impact factor: 41.582
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