Literature DB >> 19788895

On the estimation of robustness and filtering ability of dynamic biochemical networks under process delays, internal parametric perturbations and external disturbances.

Bor-Sen Chen1, Po-Wei Chen.   

Abstract

Inherently, biochemical regulatory networks suffer from process delays, internal parametrical perturbations as well as external disturbances. Robustness is the property to maintain the functions of intracellular biochemical regulatory networks despite these perturbations. In this study, system and signal processing theories are employed for measurement of robust stability and filtering ability of linear and nonlinear time-delay biochemical regulatory networks. First, based on Lyapunov stability theory, the robust stability of biochemical network is measured for the tolerance of additional process delays and additive internal parameter fluctuations. Then the filtering ability of attenuating additive external disturbances is estimated for time-delay biochemical regulatory networks. In order to overcome the difficulty of solving the Hamilton Jacobi inequality (HJI), the global linearization technique is employed to simplify the measurement procedure by a simple linear matrix inequality (LMI) method. Finally, an example is given in silico to illustrate how to measure the robust stability and filtering ability of a nonlinear time-delay perturbative biochemical network. This robust stability and filtering ability measurement for biochemical network has potential application to synthetic biology, gene therapy and drug design.

Mesh:

Substances:

Year:  2009        PMID: 19788895     DOI: 10.1016/j.mbs.2009.09.004

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  5 in total

1.  Modelling biochemical networks with intrinsic time delays: a hybrid semi-parametric approach.

Authors:  Moritz von Stosch; Joana Peres; Sebastião Feyo de Azevedo; Rui Oliveira
Journal:  BMC Syst Biol       Date:  2010-09-23

2.  On the Interplay between the Evolvability and Network Robustness in an Evolutionary Biological Network: A Systems Biology Approach.

Authors:  Bor-Sen Chen; Ying-Po Lin
Journal:  Evol Bioinform Online       Date:  2011-11-01       Impact factor: 1.625

Review 3.  Linking metabolomics data to underlying metabolic regulation.

Authors:  Thomas Nägele
Journal:  Front Mol Biosci       Date:  2014-11-06

4.  Systems biology as an integrated platform for bioinformatics, systems synthetic biology, and systems metabolic engineering.

Authors:  Bor-Sen Chen; Chia-Chou Wu
Journal:  Cells       Date:  2013-10-11       Impact factor: 6.600

5.  On the dynamics of the adenylate energy system: homeorhesis vs homeostasis.

Authors:  Ildefonso M De la Fuente; Jesús M Cortés; Edelmira Valero; Mathieu Desroches; Serafim Rodrigues; Iker Malaina; Luis Martínez
Journal:  PLoS One       Date:  2014-10-10       Impact factor: 3.240

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.