Literature DB >> 19788312

Analysis of protein conformation and dynamics by hydrogen/deuterium exchange MS.

John R Engen1.   

Abstract

Understanding as much as possible about proteins in the shortest amount of time has long been a goal of hydrogen exchange (HX) MS. Recent technological advances have led to improvements in the technique, but has this goal yet been achieved? (To listen to a podcast about this Feature, please go to the Analytical Chemistry Web site at pubs.acs.org/journal/ancham.).

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Year:  2009        PMID： 19788312      PMCID： PMC2756691          DOI： 10.1021/ac901154s

Source DB:  PubMed          Journal:  Anal Chem        ISSN： 0003-2700            Impact factor:   6.986


  42 in total

1.  Epitope mapping of a monoclonal antibody against human thrombin by H/D-exchange mass spectrometry reveals selection of a diverse sequence in a highly conserved protein.

Authors:  Abel Baerga-Ortiz; Carrie A Hughes; Jeffrey G Mandell; Elizabeth A Komives
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

2.  Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS.

Authors:  Dennis Pantazatos; Jack S Kim; Heath E Klock; Raymond C Stevens; Ian A Wilson; Scott A Lesley; Virgil L Woods
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

3.  Use of different proteases working in acidic conditions to improve sequence coverage and resolution in hydrogen/deuterium exchange of large proteins.

Authors:  Laetitia Cravello; David Lascoux; Eric Forest
Journal:  Rapid Commun Mass Spectrom       Date:  2003       Impact factor: 2.419

Review 4.  Hydrogen exchange.

Authors:  S W Englander; N W Downer; H Teitelbaum
Journal:  Annu Rev Biochem       Date:  1972       Impact factor: 23.643

Review 5.  Hydrogen exchange in proteins.

Authors:  A Hvidt; S O Nielsen
Journal:  Adv Protein Chem       Date:  1966

Review 6.  Hydrogen exchange and structural dynamics of proteins and nucleic acids.

Authors:  S W Englander; N R Kallenbach
Journal:  Q Rev Biophys       Date:  1983-11       Impact factor: 5.318

7.  An experimental procedure for increasing the structural resolution of chemical hydrogen-exchange measurements on proteins: application to ribonuclease S peptide.

Authors:  J J Rosa; F M Richards
Journal:  J Mol Biol       Date:  1979-09-25       Impact factor: 5.469

8.  Hydrogen-deuterium exchange as a probe of folding and assembly in viral capsids.

Authors:  R Tuma; L U Coward; M C Kirk; S Barnes; P E Prevelige
Journal:  J Mol Biol       Date:  2001-02-23       Impact factor: 5.469

9.  Rapid analysis of protein structure and dynamics by hydrogen/deuterium exchange mass spectrometry.

Authors:  Yoshitomo Hamuro; Stephen J Coales; Mark R Southern; Jennifer F Nemeth-Cawley; David D Stranz; Patrick R Griffin
Journal:  J Biomol Tech       Date:  2003-09

10.  Construct optimization for protein NMR structure analysis using amide hydrogen/deuterium exchange mass spectrometry.

Authors:  Seema Sharma; Haiyan Zheng; Yuanpeng J Huang; Asli Ertekin; Yoshitomo Hamuro; Paolo Rossi; Roberto Tejero; Thomas B Acton; Rong Xiao; Mei Jiang; Li Zhao; Li-Chung Ma; G V T Swapna; James M Aramini; Gaetano T Montelione
Journal:  Proteins       Date:  2009-09
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  150 in total

1.  Hydrogen-deuterium exchange mass spectrometry reveals the interaction of Fenna-Matthews-Olson protein and chlorosome CsmA protein.

Authors:  Richard Y-C Huang; Jianzhong Wen; Robert E Blankenship; Michael L Gross
Journal:  Biochemistry       Date:  2011-12-09       Impact factor: 3.162

2.  Retention time alignment of LC/MS data by a divide-and-conquer algorithm.

Authors:  Zhongqi Zhang
Journal:  J Am Soc Mass Spectrom       Date:  2012-04       Impact factor: 3.109

3.  Automated precursor ion exclusion during LC-MS/MS data acquisition for optimal ion identification.

Authors:  Zhongqi Zhang
Journal:  J Am Soc Mass Spectrom       Date:  2012-06-06       Impact factor: 3.109

4.  Many overlapping peptides for protein hydrogen exchange experiments by the fragment separation-mass spectrometry method.

Authors:  Leland Mayne; Zhong-Yuan Kan; Palaniappan Sevugan Chetty; Alec Ricciuti; Benjamin T Walters; S Walter Englander
Journal:  J Am Soc Mass Spectrom       Date:  2011-09-14       Impact factor: 3.109

5.  Conformational changes in the G protein Gs induced by the β2 adrenergic receptor.

Authors:  Ka Young Chung; Søren G F Rasmussen; Tong Liu; Sheng Li; Brian T DeVree; Pil Seok Chae; Diane Calinski; Brian K Kobilka; Virgil L Woods; Roger K Sunahara
Journal:  Nature       Date:  2011-09-28       Impact factor: 49.962

6.  Molecular insight into the conformational dynamics of the Elongin BC complex and its interaction with HIV-1 Vif.

Authors:  Sean R Marcsisin; John R Engen
Journal:  J Mol Biol       Date:  2010-08-20       Impact factor: 5.469

7.  Structure of the Human Atg13-Atg101 HORMA Heterodimer: an Interaction Hub within the ULK1 Complex.

Authors:  Shiqian Qi; Do Jin Kim; Goran Stjepanovic; James H Hurley
Journal:  Structure       Date:  2015-08-20       Impact factor: 5.006

8.  Monitoring protein conformational changes and dynamics using stable-isotope labeling and mass spectrometry.

Authors:  Alem W Kahsai; Sudarshan Rajagopal; Jinpeng Sun; Kunhong Xiao
Journal:  Nat Protoc       Date:  2014-05-08       Impact factor: 13.491

9.  Characterization of Aggregation Propensity of a Human Fc-Fusion Protein Therapeutic by Hydrogen/Deuterium Exchange Mass Spectrometry.

Authors:  Richard Y-C Huang; Roxana E Iacob; Stanley R Krystek; Mi Jin; Hui Wei; Li Tao; Tapan K Das; Adrienne A Tymiak; John R Engen; Guodong Chen
Journal:  J Am Soc Mass Spectrom       Date:  2016-08-15       Impact factor: 3.109

10.  Mapping residual structure in intrinsically disordered proteins at residue resolution using millisecond hydrogen/deuterium exchange and residue averaging.

Authors:  Theodore R Keppel; David D Weis
Journal:  J Am Soc Mass Spectrom       Date:  2014-12-07       Impact factor: 3.109
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