Literature DB >> 19783626

Distribution and phylogeny of light-oxygen-voltage-blue-light-signaling proteins in the three kingdoms of life.

Ulrich Krauss1, Bui Quang Minh, Aba Losi, Wolfgang Gärtner, Thorsten Eggert, Arndt von Haeseler, Karl-Erich Jaeger.   

Abstract

Plants and fungi respond to environmental light stimuli via the action of different photoreceptor modules. One such class, responding to the blue region of light, is constituted by photoreceptors containing so-called light-oxygen-voltage (LOV) domains as sensor modules. Four major LOV families are currently identified in eukaryotes: (i) the plant phototropins, regulating various physiological effects such as phototropism, chloroplast relocation, and stomatal opening; (ii) the aureochromes, mediating photomorphogenesis in photosynthetic stramenopile algae; (iii) the plant circadian photoreceptors of the zeitlupe (ZTL)/adagio (ADO)/flavin-binding Kelch repeat F-box protein 1 (FKF1) family; and (iv) the fungal circadian photoreceptors white-collar 1 (WC-1). Blue-light-sensitive LOV signaling modules are also widespread throughout the prokaryotic world, and physiological responses mediated by bacterial LOV photoreceptors were recently reported. Thus, the question arises as to the evolutionary relationship between the pro- and eukaryotic LOV photoreceptor systems. We used Bayesian and maximum-likelihood tree reconstruction methods to infer evolutionary scenarios that might have led to the widespread appearance of LOV domains among the pro- and eukaryotes. The phylogenetic study presented here suggests a bacterial origin for the LOV domains of the four major eukaryotic LOV photoreceptor families, whereas the LOV sensor domains were most likely recruited from the bacteria in the course of plastid and mitochondrial endosymbiosis.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19783626      PMCID: PMC2786558          DOI: 10.1128/JB.00923-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  60 in total

Review 1.  Chloroplast origin and integration.

Authors:  G I McFadden
Journal:  Plant Physiol       Date:  2001-01       Impact factor: 8.340

2.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

3.  MRBAYES: Bayesian inference of phylogenetic trees.

Authors:  J P Huelsenbeck; F Ronquist
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

4.  DAMBE: software package for data analysis in molecular biology and evolution.

Authors:  X Xia; Z Xie
Journal:  J Hered       Date:  2001 Jul-Aug       Impact factor: 2.645

5.  CONSEL: for assessing the confidence of phylogenetic tree selection.

Authors:  H Shimodaira; M Hasegawa
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

6.  TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.

Authors:  Heiko A Schmidt; Korbinian Strimmer; Martin Vingron; Arndt von Haeseler
Journal:  Bioinformatics       Date:  2002-03       Impact factor: 6.937

7.  T-Coffee: A novel method for fast and accurate multiple sequence alignment.

Authors:  C Notredame; D G Higgins; J Heringa
Journal:  J Mol Biol       Date:  2000-09-08       Impact factor: 5.469

8.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

9.  FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis.

Authors:  D C Nelson; J Lasswell; L E Rogg; M A Cohen; B Bartel
Journal:  Cell       Date:  2000-04-28       Impact factor: 41.582

10.  Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin.

Authors:  M Salomon; J M Christie; E Knieb; U Lempert; W R Briggs
Journal:  Biochemistry       Date:  2000-08-08       Impact factor: 3.162

View more
  36 in total

Review 1.  A glimpse into the basis of vision in the kingdom Mycota.

Authors:  Alexander Idnurm; Surbhi Verma; Luis M Corrochano
Journal:  Fungal Genet Biol       Date:  2010-05-06       Impact factor: 3.495

2.  The role of a 14-3-3 protein in stomatal opening mediated by PHOT2 in Arabidopsis.

Authors:  Tong-Seung Tseng; Craig Whippo; Roger P Hangarter; Winslow R Briggs
Journal:  Plant Cell       Date:  2012-03-09       Impact factor: 11.277

3.  The LovK-LovR two-component system is a regulator of the general stress pathway in Caulobacter crescentus.

Authors:  Robert Foreman; Aretha Fiebig; Sean Crosson
Journal:  J Bacteriol       Date:  2012-03-09       Impact factor: 3.490

4.  Stressed by a Lov triangle.

Authors:  Silvia Ardissone; Patrick H Viollier
Journal:  J Bacteriol       Date:  2012-03-23       Impact factor: 3.490

5.  Light regulates attachment, exopolysaccharide production, and nodulation in Rhizobium leguminosarum through a LOV-histidine kinase photoreceptor.

Authors:  Hernán R Bonomi; Diana M Posadas; Gastón Paris; Mariela del Carmen Carrica; Marcus Frederickson; Lía Isabel Pietrasanta; Roberto A Bogomolni; Angeles Zorreguieta; Fernando A Goldbaum
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-05       Impact factor: 11.205

Review 6.  Evolutionary aspects of plant photoreceptors.

Authors:  Fay-Wei Li; Sarah Mathews
Journal:  J Plant Res       Date:  2016-02-03       Impact factor: 2.629

Review 7.  Phototropism: some history, some puzzles, and a look ahead.

Authors:  Winslow R Briggs
Journal:  Plant Physiol       Date:  2014-01       Impact factor: 8.340

Review 8.  Algal light sensing and photoacclimation in aquatic environments.

Authors:  Deqiang Duanmu; Nathan C Rockwell; J Clark Lagarias
Journal:  Plant Cell Environ       Date:  2017-05-11       Impact factor: 7.228

9.  Functional and topological diversity of LOV domain photoreceptors.

Authors:  Spencer T Glantz; Eric J Carpenter; Michael Melkonian; Kevin H Gardner; Edward S Boyden; Gane Ka-Shu Wong; Brian Y Chow
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-29       Impact factor: 11.205

10.  Evolution of PAS domains and PAS-containing genes in eukaryotes.

Authors:  Qiming Mei; Volodymyr Dvornyk
Journal:  Chromosoma       Date:  2014-04-04       Impact factor: 4.316

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.