Literature DB >> 19783425

Single DNA/protein studies with magnetic traps.

Adrien Meglio1, Elise Praly, Fangyuan Ding, Jean-Francois Allemand, David Bensimon, Vincent Croquette.   

Abstract

Magnetic traps provide a simple technique to pull and twist a variety of biomolecules and monitor the resulting change in extension. They have been used with great success to investigate the interaction of stretched and supercoiled DNA and DNA fibers (e.g. chromatin) with a great variety of enzymes. In this small review we will address their recent use in the study of topoisomerases, gyrase, DNA translocases and various structural proteins.

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Year:  2009        PMID： 19783425     DOI： 10.1016/j.sbi.2009.08.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN： 0959-440X            Impact factor:   6.809


  10 in total

Review 1.  Physics of bacterial morphogenesis.

Authors:  Sean X Sun; Hongyuan Jiang
Journal:  Microbiol Mol Biol Rev       Date:  2011-12       Impact factor: 11.056

Review 2.  In front of and behind the replication fork: bacterial type IIA topoisomerases.

Authors:  Claudia Sissi; Manlio Palumbo
Journal:  Cell Mol Life Sci       Date:  2010-02-18       Impact factor: 9.261

3.  Range of interaction between DNA-bending proteins is controlled by the second-longest correlation length for bending fluctuations.

Authors:  Houyin Zhang; John F Marko
Journal:  Phys Rev Lett       Date:  2012-12-10       Impact factor: 9.161

Review 4.  Chromatin fiber dynamics under tension and torsion.

Authors:  Christophe Lavelle; Jean-Marc Victor; Jordanka Zlatanova
Journal:  Int J Mol Sci       Date:  2010-04-12       Impact factor: 5.923

Review 5.  Motor proteins and molecular motors: how to operate machines at the nanoscale.

Authors:  Anatoly B Kolomeisky
Journal:  J Phys Condens Matter       Date:  2013-10-07       Impact factor: 2.333

6.  Keep It Flexible: Driving Macromolecular Rotary Motions in Atomistic Simulations with GROMACS.

Authors:  Carsten Kutzner; Jacek Czub; Helmut Grubmüller
Journal:  J Chem Theory Comput       Date:  2011-03-31       Impact factor: 6.006

Review 7.  High-resolution optical tweezers for single-molecule manipulation.

Authors:  Xinming Zhang; Lu Ma; Yongli Zhang
Journal:  Yale J Biol Med       Date:  2013-09-20

8.  'Single molecule': theory and experiments, an introduction.

Authors:  Daniel Riveline
Journal:  J Nanobiotechnology       Date:  2013-12-10       Impact factor: 10.435

9.  H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin.

Authors:  Ping Chen; Jicheng Zhao; Yan Wang; Min Wang; Haizhen Long; Dan Liang; Li Huang; Zengqi Wen; Wei Li; Xia Li; Hongli Feng; Haiyong Zhao; Ping Zhu; Ming Li; Qian-fei Wang; Guohong Li
Journal:  Genes Dev       Date:  2013-09-24       Impact factor: 11.361

10.  Imaging and energetics of single SSB-ssDNA molecules reveal intramolecular condensation and insight into RecOR function.

Authors:  Jason C Bell; Bian Liu; Stephen C Kowalczykowski
Journal:  Elife       Date:  2015-09-18       Impact factor: 8.140
  10 in total

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