Literature DB >> 19778106

Full-electron calculation of effective electronic couplings and excitation energies of charge transfer states: Application to hole transfer in DNA pi-stacks.

Agostino Migliore1.   

Abstract

In this work I develop and apply a theoretical method for calculating effective electronic couplings (or transfer integrals) between redox sites involved in hole or electron transfer reactions. The resulting methodology is a refinement and a generalization of a recently developed approach for transfer integral evaluation. In fact, it holds for any overlap between the charge-localized states used to represent charge transfer (CT) processes in the two-state model. The presented theoretical and computational analyses show that the prototype approach is recovered for sufficiently small overlaps. The method does not involve any empirical parameter. It allows a complete multielectron description, therefore including electronic relaxation effects. Furthermore, its theoretical formulation holds at any value of the given reaction coordinate and yields a formula for the evaluation of the vertical excitation energy (i.e., the energy difference between the adiabatic ground and first-excited electronic states) that rests on the same physical quantities used in transfer integral calculation. In this paper the theoretical approach is applied to CT in B-DNA base dimers within the framework of Density Functional Theory (DFT), although it can be implemented in other computational schemes. The results of this work, as compared with previous Hartree-Fock (HF) and post-HF evaluations, support the applicability of the current implementation of the method to larger pi-stacked arrays, where post-HF approaches are computationally unfeasible.

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Year:  2009        PMID: 19778106      PMCID: PMC2766402          DOI: 10.1063/1.3232007

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  39 in total

1.  Electron transmission through molecules and molecular interfaces.

Authors:  A Nitzan
Journal:  Annu Rev Phys Chem       Date:  2001       Impact factor: 12.703

Review 2.  Long-range charge transfer in DNA: transient structural distortions control the distance dependence.

Authors:  G B Schuster
Journal:  Acc Chem Res       Date:  2000-04       Impact factor: 22.384

3.  Absence of dc-conductivity in lambda-DNA.

Authors:  P J de Pablo; F Moreno-Herrero; J Colchero; J Gómez Herrero; P Herrero; A M Baró; P Ordejón; J M Soler; E Artacho
Journal:  Phys Rev Lett       Date:  2000-12-04       Impact factor: 9.161

4.  Performance assessment of density-functional methods for study of charge-transfer complexes.

Authors:  Meng-Sheng Liao; Yun Lu; Steve Scheiner
Journal:  J Comput Chem       Date:  2003-04-15       Impact factor: 3.376

Review 5.  Long-range DNA charge transport.

Authors:  Sarah Delaney; Jacqueline K Barton
Journal:  J Org Chem       Date:  2003-08-22       Impact factor: 4.354

6.  Ultraviolet absorption spectra of substituted phenols: a computational study.

Authors:  Lei Zhang; Gilles H Peslherbe; Heidi M Muchall
Journal:  Photochem Photobiol       Date:  2006 Jan-Feb       Impact factor: 3.421

7.  Ab initio based calculations of electron-transfer rates in metalloproteins.

Authors:  Tatiana R Prytkova; Igor V Kurnikov; David N Beratan
Journal:  J Phys Chem B       Date:  2005-02-03       Impact factor: 2.991

8.  Direct observation of hole transfer through DNA by hopping between adenine bases and by tunnelling.

Authors:  B Giese; J Amaudrut; A K Köhler; M Spormann; S Wessely
Journal:  Nature       Date:  2001-07-19       Impact factor: 49.962

9.  Gas-phase DNA oligonucleotide structures. A QM/MM and atoms in molecules study.

Authors:  Arturo Robertazzi; James A Platts
Journal:  J Phys Chem A       Date:  2006-03-23       Impact factor: 2.781

10.  Benchmarks for electronically excited states: CASPT2, CC2, CCSD, and CC3.

Authors:  Marko Schreiber; Mario R Silva-Junior; Stephan P A Sauer; Walter Thiel
Journal:  J Chem Phys       Date:  2008-04-07       Impact factor: 3.488

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  11 in total

1.  Defusing redox bombs?

Authors:  Nicholas F Polizzi; Agostino Migliore; Michael J Therien; David N Beratan
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-19       Impact factor: 11.205

2.  Long-range charge transport in single G-quadruplex DNA molecules.

Authors:  Gideon I Livshits; Avigail Stern; Dvir Rotem; Natalia Borovok; Gennady Eidelshtein; Agostino Migliore; Erika Penzo; Shalom J Wind; Rosa Di Felice; Spiros S Skourtis; Juan Carlos Cuevas; Leonid Gurevich; Alexander B Kotlyar; Danny Porath
Journal:  Nat Nanotechnol       Date:  2014-10-26       Impact factor: 39.213

3.  Charge Transfer between [4Fe4S] Proteins and DNA Is Unidirectional: Implications for Biomolecular Signaling.

Authors:  Ruijie D Teo; Benjamin J G Rousseau; Elizabeth R Smithwick; Rosa Di Felice; David N Beratan; Agostino Migliore
Journal:  Chem       Date:  2018-10-25       Impact factor: 22.804

4.  Electron transfer characteristics of 2'-deoxy-2'-fluoro-arabinonucleic acid, a nucleic acid with enhanced chemical stability.

Authors:  Ruijie D Teo; Kiriko Terai; Agostino Migliore; David N Beratan
Journal:  Phys Chem Chem Phys       Date:  2018-09-07       Impact factor: 3.676

Review 5.  Biochemistry and theory of proton-coupled electron transfer.

Authors:  Agostino Migliore; Nicholas F Polizzi; Michael J Therien; David N Beratan
Journal:  Chem Rev       Date:  2014-04-01       Impact factor: 60.622

6.  A single AT-GC exchange can modulate charge transfer-induced p53-DNA dissociation.

Authors:  Ruijie D Teo; Elizabeth R Smithwick; Agostino Migliore; David N Beratan
Journal:  Chem Commun (Camb)       Date:  2018-12-20       Impact factor: 6.222

7.  2'-Deoxy-2'-fluoro-arabinonucleic acid: a valid alternative to DNA for biotechnological applications using charge transport.

Authors:  Ruijie D Teo; Elizabeth R Smithwick; Agostino Migliore
Journal:  Phys Chem Chem Phys       Date:  2019-10-24       Impact factor: 3.676

8.  Effects of G-Quadruplex Topology on Electronic Transfer Integrals.

Authors:  Wenming Sun; Daniele Varsano; Rosa Di Felice
Journal:  Nanomaterials (Basel)       Date:  2016-10-15       Impact factor: 5.076

9.  Dynamical treatment of charge transfer through duplex nucleic acids containing modified adenines.

Authors:  Giorgia Brancolini; Agostino Migliore; Stefano Corni; Miguel Fuentes-Cabrera; F Javier Luque; Rosa Di Felice
Journal:  ACS Nano       Date:  2013-09-30       Impact factor: 15.881

Review 10.  Charge transfer in dynamical biosystems, or the treachery of (static) images.

Authors:  David N Beratan; Chaoren Liu; Agostino Migliore; Nicholas F Polizzi; Spiros S Skourtis; Peng Zhang; Yuqi Zhang
Journal:  Acc Chem Res       Date:  2014-10-13       Impact factor: 22.384

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