Literature DB >> 19777091

Highly parallel measurements of interaction kinetic constants with a microfabricated optomechanical device.

Steven R Bates, Stephen R Quake.   

Abstract

We used mechanical trapping of molecular interactions to demonstrate a highly parallel approach to measure the kinetics of biomolecular interactions. This approach consumes 25 fmol of material per measurement and permits 320 measurements in a single experiment. We measured association and dissociation curves for the interactions of 6-His and T7 epitope tags with their antibodies, from which we determined the off rates, on rates, and dissociation constants.

Entities:  

Year:  2009        PMID: 19777091      PMCID: PMC2749446          DOI: 10.1063/1.3211382

Source DB:  PubMed          Journal:  Appl Phys Lett        ISSN: 0003-6951            Impact factor:   3.791


  10 in total

1.  Exploring buffer space for molecular interactions.

Authors:  K Andersson; D Areskoug; E Hardenborg
Journal:  J Mol Recognit       Date:  1999 Sep-Oct       Impact factor: 2.137

Review 2.  SPR for molecular interaction analysis: a review of emerging application areas.

Authors:  Robert Karlsson
Journal:  J Mol Recognit       Date:  2004 May-Jun       Impact factor: 2.137

Review 3.  Yeast two-hybrid contributions to interactome mapping.

Authors:  Jodi R Parrish; Keith D Gulyas; Russell L Finley
Journal:  Curr Opin Biotechnol       Date:  2006-06-27       Impact factor: 9.740

4.  A systems approach to measuring the binding energy landscapes of transcription factors.

Authors:  Sebastian J Maerkl; Stephen R Quake
Journal:  Science       Date:  2007-01-12       Impact factor: 47.728

Review 5.  SPR microscopy and its applications to high-throughput analyses of biomolecular binding events and their kinetics.

Authors:  Charles T Campbell; Gibum Kim
Journal:  Biomaterials       Date:  2007-03-06       Impact factor: 12.479

6.  Kinetic analysis of macromolecular interactions using surface plasmon resonance biosensors.

Authors:  T A Morton; D G Myszka
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

7.  A quantitative protein interaction network for the ErbB receptors using protein microarrays.

Authors:  Richard B Jones; Andrew Gordus; Jordan A Krall; Gavin MacBeath
Journal:  Nature       Date:  2005-11-06       Impact factor: 49.962

8.  Large-scale identification of protein-protein interaction of Escherichia coli K-12.

Authors:  Mohammad Arifuzzaman; Maki Maeda; Aya Itoh; Kensaku Nishikata; Chiharu Takita; Rintaro Saito; Takeshi Ara; Kenji Nakahigashi; Hsuan-Cheng Huang; Aki Hirai; Kohei Tsuzuki; Seira Nakamura; Mohammad Altaf-Ul-Amin; Taku Oshima; Tomoya Baba; Natsuko Yamamoto; Tomoyo Kawamura; Tomoko Ioka-Nakamichi; Masanari Kitagawa; Masaru Tomita; Shigehiko Kanaya; Chieko Wada; Hirotada Mori
Journal:  Genome Res       Date:  2006-04-10       Impact factor: 9.043

9.  An in vitro microfluidic approach to generating protein-interaction networks.

Authors:  Doron Gerber; Sebastian J Maerkl; Stephen R Quake
Journal:  Nat Methods       Date:  2008-12-21       Impact factor: 28.547

10.  Microfluidic device for immunoassays based on surface plasmon resonance imaging.

Authors:  Yiqi Luo; Fang Yu; Richard N Zare
Journal:  Lab Chip       Date:  2008-03-28       Impact factor: 6.799

  10 in total
  9 in total

1.  New technologies for 21st century plant science.

Authors:  David W Ehrhardt; Wolf B Frommer
Journal:  Plant Cell       Date:  2012-02-24       Impact factor: 11.277

2.  Microfluidic force spectroscopy for characterization of biomolecular interactions with piconewton resolution.

Authors:  M Javanmard; F Babrzadeh; R W Davis
Journal:  Appl Phys Lett       Date:  2010-10-29       Impact factor: 3.791

Review 3.  Experimental strategies for studying transcription factor-DNA binding specificities.

Authors:  Marcel Geertz; Sebastian J Maerkl
Journal:  Brief Funct Genomics       Date:  2010-09-23       Impact factor: 4.241

4.  Massively parallel measurements of molecular interaction kinetics on a microfluidic platform.

Authors:  Marcel Geertz; David Shore; Sebastian J Maerkl
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-24       Impact factor: 11.205

5.  An off-the-shelf integrated microfluidic device comprising self-assembled monolayers for protein array experiments.

Authors:  Mirit Hen; Maria Ronen; Alex Deitch; Efrat Barbiro-Michaely; Ziv Oren; Chaim N Sukenik; Doron Gerber
Journal:  Biomicrofluidics       Date:  2015-09-16       Impact factor: 2.800

6.  Microfluidic automation using elastomeric valves and droplets: reducing reliance on external controllers.

Authors:  Sung-Jin Kim; David Lai; Joong Yull Park; Ryuji Yokokawa; Shuichi Takayama
Journal:  Small       Date:  2012-07-03       Impact factor: 13.281

7.  Systematic analysis of low-affinity transcription factor binding site clusters in vitro and in vivo establishes their functional relevance.

Authors:  Amir Shahein; Maria López-Malo; Ivan Istomin; Evan J Olson; Shiyu Cheng; Sebastian J Maerkl
Journal:  Nat Commun       Date:  2022-09-07       Impact factor: 17.694

8.  iSLIM: a comprehensive approach to mapping and characterizing gene regulatory networks.

Authors:  Sylvie Rockel; Marcel Geertz; Korneel Hens; Bart Deplancke; Sebastian J Maerkl
Journal:  Nucleic Acids Res       Date:  2012-12-20       Impact factor: 16.971

9.  Three Recombinant Engineered Antibodies against Recombinant Tags with High Affinity and Specificity.

Authors:  Hongyu Zhao; Ao Shen; Yang K Xiang; David P Corey
Journal:  PLoS One       Date:  2016-03-04       Impact factor: 3.240

  9 in total

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