Literature DB >> 19777090

Selective probing of mRNA expression levels within a living cell.

D Nawarathna, T Turan, H Kumar Wickramasinghe.   

Abstract

We report on a selective and nondestructive measurement of mRNA (messenger ribonucleic acid) expression levels within a living cell. We first modify an atomic force microscope tip to create a tapered nanoscale coaxial cable. Application of an ac (alternating potential) between the inner and outer electrodes of this cable creates a dielectrophoretic force attracting mRNA molecules toward the tip-end which is pretreated with gene specific primers. We selectively extracted and analyzed both high ( approximately 2500) and extremely low (11 0) copy number mRNA from a living cell mRNA in less than 10 s.

Year:  2009        PMID: 19777090      PMCID: PMC2749444          DOI: 10.1063/1.3213343

Source DB:  PubMed          Journal:  Appl Phys Lett        ISSN: 0003-6951            Impact factor:   3.791


  8 in total

Review 1.  Molecular genetic applications of streptavidin-coated manifold supports.

Authors:  G Barbany; A Hagberg; E Waldenström; U Landegren
Journal:  Biomol Eng       Date:  1999-12-31

2.  Probing protein-protein interactions in real time.

Authors:  M B Viani; L I Pietrasanta; J B Thompson; A Chand; I C Gebeshuber; J H Kindt; M Richter; H G Hansma; P K Hansma
Journal:  Nat Struct Biol       Date:  2000-08

3.  Free-flow electrophoresis with trapping by a transverse inhomogeneous field.

Authors:  A Ajdari; J Prost
Journal:  Proc Natl Acad Sci U S A       Date:  1991-05-15       Impact factor: 11.205

4.  Analysis of gene expression in single live neurons.

Authors:  J Eberwine; H Yeh; K Miyashiro; Y Cao; S Nair; R Finnell; M Zettel; P Coleman
Journal:  Proc Natl Acad Sci U S A       Date:  1992-04-01       Impact factor: 11.205

5.  Microfluidic single-cell mRNA isolation and analysis.

Authors:  Joshua S Marcus; W French Anderson; Stephen R Quake
Journal:  Anal Chem       Date:  2006-05-01       Impact factor: 6.986

6.  Quantification of mRNA using real-time RT-PCR.

Authors:  Tania Nolan; Rebecca E Hands; Stephen A Bustin
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

7.  mRNA detection of individual cells with the single cell nanoprobe method compared with in situ hybridization.

Authors:  Hironori Uehara; Yuji Kunitomi; Atsushi Ikai; Toshiya Osada
Journal:  J Nanobiotechnology       Date:  2007-10-10       Impact factor: 10.435

8.  mRNA analysis of single living cells.

Authors:  Toshiya Osada; Hironori Uehara; Hyonchol Kim; Atsushi Ikai
Journal:  J Nanobiotechnology       Date:  2003-02-14       Impact factor: 10.435

  8 in total
  11 in total

1.  Targeted messenger RNA profiling of transfected breast cancer gene in a living cell.

Authors:  D Nawarathna; R Chang; E Nelson; H Kumar Wickramasinghe
Journal:  Anal Biochem       Date:  2010-08-17       Impact factor: 3.365

2.  Nanoneedle-Based Materials for Intracellular Studies.

Authors:  Julia E Sero; Molly M Stevens
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

3.  Integrated dielectrophoretic and surface plasmonic platform for million-fold improvement in the detection of fluorescent events.

Authors:  Logeeshan Velmanickam; Michael Fondakowski; Ivan T Lima; Dharmakeerthi Nawarathna
Journal:  Biomicrofluidics       Date:  2017-08-22       Impact factor: 2.800

4.  High-throughput microfluidic single-cell trapping arrays for biomolecular and imaging analysis.

Authors:  Xuan Li; Abraham P Lee
Journal:  Methods Cell Biol       Date:  2018-11-05       Impact factor: 1.441

5.  mRNA-based CAR T-cells manufactured by miniaturized two-step electroporation produce selective cytotoxicity toward target cancer cells.

Authors:  Vidura Jayasooriya; Beth Ringwelski; Glenn Dorsam; Dharmakeerthi Nawarathna
Journal:  Lab Chip       Date:  2021-09-28       Impact factor: 7.517

Review 6.  Extending applications of AFM to fluidic AFM in single living cell studies.

Authors:  Yuan Qiu; Chen-Chi Chien; Basile Maroulis; Jiani Bei; Angelo Gaitas; Bin Gong
Journal:  J Cell Physiol       Date:  2022-06-13       Impact factor: 6.513

Review 7.  Micro- and Nanoscale Technologies for Delivery into Adherent Cells.

Authors:  Wonmo Kang; Rebecca L McNaughton; Horacio D Espinosa
Journal:  Trends Biotechnol       Date:  2016-06-07       Impact factor: 19.536

8.  Compartmental genomics in living cells revealed by single-cell nanobiopsy.

Authors:  Paolo Actis; Michelle M Maalouf; Hyunsung John Kim; Akshar Lohith; Boaz Vilozny; R Adam Seger; Nader Pourmand
Journal:  ACS Nano       Date:  2013-12-04       Impact factor: 15.881

Review 9.  Mitochondrial isolation: when size matters.

Authors:  Alexander G Bury; Amy E Vincent; Doug M Turnbull; Paolo Actis; Gavin Hudson
Journal:  Wellcome Open Res       Date:  2020-12-02

10.  Fabrication of functional micro- and nanoneedle electrodes using a carbon nanotube template and electrodeposition.

Authors:  Taechang An; Wooseok Choi; Eunjoo Lee; In-Tae Kim; Wonkyu Moon; Geunbae Lim
Journal:  Nanoscale Res Lett       Date:  2011-04-07       Impact factor: 4.703

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