Literature DB >> 19768599

High-throughput methods for SNP genotyping.

Chunming Ding1, Shengnan Jin.   

Abstract

Single nucleotide polymorphisms (SNPs) are ideal markers for identifying genes associated with complex diseases for two main reasons. Firstly, SNPs are densely located on the human genome at about one SNP per approximately 500-1,000 base pairs. Secondly, a large number of commercial platforms are available for semiautomated or fully automated SNP genotyping. These SNP genotyping platforms serve different purposes since they differ in SNP selection, reaction chemistry, signal detection, throughput, cost, and assay flexibility. This chapter aims to give an overview of some of these platforms by explaining the technologies behind each platform and identifying the best application scenarios for each platform through cross-comparison. The readers may delve into more technical details in the following chapters.

Entities:  

Mesh：

Year:  2009        PMID： 19768599     DOI： 10.1007/978-1-60327-411-1_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  17 in total

1.  Southeast Asian origins of five Hill Tribe populations and correlation of genetic to linguistic relationships inferred with genome-wide SNP data.

Authors:  J B Listman; R T Malison; K Sanichwankul; C Ittiwut; A Mutirangura; J Gelernter
Journal:  Am J Phys Anthropol       Date:  2011-02       Impact factor: 2.868

2.  Genetic polymorphisms of metabolic enzymes and the pharmacokinetics of indapamide in Taiwanese subjects.

Authors:  Teng-Hsu Wang; Cheng-Huei Hsiong; Hsin-Tien Ho; Tung-Yuan Shih; San-Jan Yen; Hui-Hung Wang; Jer-Yuarn Wu; Benjamin Pei-Chung Kuo; Yuan-Tsong Chen; Shung-Tai Ho; Oliver Yoa-Pu Hu
Journal:  AAPS J       Date:  2013-12-20       Impact factor: 4.009

3.  Multiplexed shotgun genotyping for rapid and efficient genetic mapping.

Authors:  Peter Andolfatto; Dan Davison; Deniz Erezyilmaz; Tina T Hu; Joshua Mast; Tomoko Sunayama-Morita; David L Stern
Journal:  Genome Res       Date:  2011-01-13       Impact factor: 9.043

4.  An integrative approach to genomic introgression mapping.

Authors:  Andrew J Severin; Gregory A Peiffer; Wayne W Xu; David L Hyten; Bruna Bucciarelli; Jamie A O'Rourke; Yung-Tsi Bolon; David Grant; Andrew D Farmer; Gregory D May; Carroll P Vance; Randy C Shoemaker; Robert M Stupar
Journal:  Plant Physiol       Date:  2010-07-23       Impact factor: 8.340

5.  Post-genomic update on a classical candidate gene for coronary artery disease: ESR1.

Authors:  Gavin Lucas; Carla Lluís-Ganella; Isaac Subirana; Mariano Sentí; Christina Willenborg; Muntaser D Musameh; Stephen M Schwartz; Christopher J O'Donnell; Olle Melander; Veikko Salomaa; Roberto Elosua
Journal:  Circ Cardiovasc Genet       Date:  2011-10-09

Review 6.  Advances in the molecular detection of ABC transporters involved in multidrug resistance in cancer.

Authors:  Jean-Pierre Gillet; Michael M Gottesman
Journal:  Curr Pharm Biotechnol       Date:  2011-04       Impact factor: 2.837

7.  SNP/RD typing of Mycobacterium tuberculosis Beijing strains reveals local and worldwide disseminated clonal complexes.

Authors:  Anita C Schürch; Kristin Kremer; Amber C A Hendriks; Benthe Freyee; Christopher R E McEvoy; Reinout van Crevel; Martin J Boeree; Paul van Helden; Robin M Warren; Roland J Siezen; Dick van Soolingen
Journal:  PLoS One       Date:  2011-12-05       Impact factor: 3.240

8.  Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models.

Authors:  Dawn N Birdsell; Talima Pearson; Erin P Price; Heidie M Hornstra; Roxanne D Nera; Nathan Stone; Jeffrey Gruendike; Emily L Kaufman; Amanda H Pettus; Audriana N Hurbon; Jordan L Buchhagen; N Jane Harms; Gvantsa Chanturia; Miklos Gyuranecz; David M Wagner; Paul S Keim
Journal:  PLoS One       Date:  2012-03-16       Impact factor: 3.240

9.  DNA fingerprinting of Chinese melon provides evidentiary support of seed quality appraisal.

Authors:  Peng Gao; Hongyan Ma; Feishi Luan; Haibin Song
Journal:  PLoS One       Date:  2012-12-20       Impact factor: 3.240

10.  Development and evaluation of SoySNP50K, a high-density genotyping array for soybean.

Authors:  Qijian Song; David L Hyten; Gaofeng Jia; Charles V Quigley; Edward W Fickus; Randall L Nelson; Perry B Cregan
Journal:  PLoS One       Date:  2013-01-25       Impact factor: 3.240
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