Literature DB >> 19763987

Modeling spatial and temporal dynamics of chemotactic networks.

Liu Yang1, Pablo A Iglesias.   

Abstract

When stimulated by chemoattractants, eukaryotic cells respond through a combination of temporal and spatial dynamics. These responses come about because of the interaction of a large number of signaling components. The complexity of these systems makes it hard to understand without a means of systematically generating and testing hypotheses. Computer simulations have proved to be useful in testing conceptual models. Here we outline the steps required to develop these models.

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Year:  2009        PMID: 19763987      PMCID: PMC6684028          DOI: 10.1007/978-1-60761-198-1_32

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  15 in total

Review 1.  Quantitative cell biology with the Virtual Cell.

Authors:  Boris M Slepchenko; James C Schaff; Ian Macara; Leslie M Loew
Journal:  Trends Cell Biol       Date:  2003-11       Impact factor: 20.808

Review 2.  Chemotaxis: signalling modules join hands at front and tail.

Authors:  Marten Postma; Leonard Bosgraaf; Harriët M Loovers; Peter J M Van Haastert
Journal:  EMBO Rep       Date:  2004-01       Impact factor: 8.807

3.  Chemoattractant-induced phosphatidylinositol 3,4,5-trisphosphate accumulation is spatially amplified and adapts, independent of the actin cytoskeleton.

Authors:  Chris Janetopoulos; Lan Ma; Peter N Devreotes; Pablo A Iglesias
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-07       Impact factor: 11.205

Review 4.  Conformational spread: the propagation of allosteric states in large multiprotein complexes.

Authors:  Dennis Bray; Thomas Duke
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

Review 5.  The ups and downs of modeling the cell cycle.

Authors:  Nicholas T Ingolia; Andrew W Murray
Journal:  Curr Biol       Date:  2004-09-21       Impact factor: 10.834

6.  Two complementary, local excitation, global inhibition mechanisms acting in parallel can explain the chemoattractant-induced regulation of PI(3,4,5)P3 response in dictyostelium cells.

Authors:  Lan Ma; Chris Janetopoulos; Liu Yang; Peter N Devreotes; Pablo A Iglesias
Journal:  Biophys J       Date:  2004-10-01       Impact factor: 4.033

7.  Coordination of chromosome alignment and mitotic progression by the chromosome-based Ran signal.

Authors:  Hoi Y Li; Win Pin Ng; Chi H Wong; Pablo A Iglesias; Yixian Zheng
Journal:  Cell Cycle       Date:  2007-05-24       Impact factor: 4.534

8.  Tools for kinetic modeling of biochemical networks.

Authors:  Rui Alves; Fernando Antunes; Armindo Salvador
Journal:  Nat Biotechnol       Date:  2006-06       Impact factor: 54.908

Review 9.  Navigating through models of chemotaxis.

Authors:  Pablo A Iglesias; Peter N Devreotes
Journal:  Curr Opin Cell Biol       Date:  2008-01-18       Impact factor: 8.382

Review 10.  Overview of mathematical approaches used to model bacterial chemotaxis I: the single cell.

Authors:  M J Tindall; S L Porter; P K Maini; G Gaglia; J P Armitage
Journal:  Bull Math Biol       Date:  2008-07-19       Impact factor: 1.758

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  2 in total

Review 1.  Use of virtual cell in studies of cellular dynamics.

Authors:  Boris M Slepchenko; Leslie M Loew
Journal:  Int Rev Cell Mol Biol       Date:  2010       Impact factor: 6.813

Review 2.  Virtual Cell: computational tools for modeling in cell biology.

Authors:  Diana C Resasco; Fei Gao; Frank Morgan; Igor L Novak; James C Schaff; Boris M Slepchenko
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2011-12-02
  2 in total

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