| Literature DB >> 19763233 |
Jakub Kurzak1, Dragan Mirkovic, B Montgomery Pettitt, S Lennart Johnsson.
Abstract
The fast multipole method (FMM) is an efficient algorithm for calculating electrostatic interactions in molecular simulations and a promising alternative to Ewald summation methods. Translation of multipole expansion in spherical harmonics is the most important operation of the fast multipole method and the fast Fourier transform (FFT) acceleration of this operation is among the fastest methods of improving its performance. The technique relies on highly optimized implementation of fast Fourier transform routines for the desired expansion sizes, which need to incorporate the knowledge of symmetries and zero elements in the input arrays. Here a method is presented for automatic generation of such, highly optimized, routines.Year: 2008 PMID: 19763233 PMCID: PMC2744990 DOI: 10.1177/1094342008090915
Source DB: PubMed Journal: Int J High Perform Comput Appl ISSN: 1094-3420 Impact factor: 1.942