Literature DB >> 19762935

FINE: fisher information nonparametric embedding.

Kevin M Carter1, Raviv Raich, William G Finn, Alfred O Hero.   

Abstract

We consider the problems of clustering, classification, and visualization of high-dimensional data when no straightforward euclidean representation exists. In this paper, we propose using the properties of information geometry and statistical manifolds in order to define similarities between data sets using the Fisher information distance. We will show that this metric can be approximated using entirely nonparametric methods, as the parameterization and geometry of the manifold is generally unknown. Furthermore, by using multidimensional scaling methods, we are able to reconstruct the statistical manifold in a low-dimensional euclidean space; enabling effective learning on the data. As a whole, we refer to our framework as Fisher Information Nonparametric Embedding (FINE) and illustrate its uses on practical problems, including a biomedical application and document classification.

Mesh:

Year:  2009        PMID: 19762935     DOI: 10.1109/TPAMI.2009.67

Source DB:  PubMed          Journal:  IEEE Trans Pattern Anal Mach Intell        ISSN: 0098-5589            Impact factor:   6.226


  5 in total

1.  Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.

Authors:  Daigo Okada; Naotoshi Nakamura; Kazuya Setoh; Takahisa Kawaguchi; Koichiro Higasa; Yasuharu Tabara; Fumihiko Matsuda; Ryo Yamada
Journal:  J Hum Genet       Date:  2020-11-23       Impact factor: 3.172

2.  Novel data analysis method for multicolour flow cytometry links variability of multiple markers on single cells to a clinical phenotype.

Authors:  Gerjen H Tinnevelt; Marietta Kokla; Bart Hilvering; Selma van Staveren; Rita Folcarelli; Luzheng Xue; Andries C Bloem; Leo Koenderman; Lutgarde M C Buydens; Jeroen J Jansen
Journal:  Sci Rep       Date:  2017-07-14       Impact factor: 4.379

3.  Decomposition of a set of distributions in extended exponential family form for distinguishing multiple oligo-dimensional marker expression profiles of single-cell populations and visualizing their dynamics.

Authors:  Daigo Okada; Ryo Yamada
Journal:  PLoS One       Date:  2020-04-10       Impact factor: 3.240

4.  Data-driven comparison of multiple high-dimensional single-cell expression profiles.

Authors:  Daigo Okada; Jian Hao Cheng; Cheng Zheng; Ryo Yamada
Journal:  J Hum Genet       Date:  2021-11-01       Impact factor: 3.172

5.  Mathematical model for the relationship between single-cell and bulk gene expression to clarify the interpretation of bulk gene expression data.

Authors:  Daigo Okada; Cheng Zheng; Jian Hao Cheng
Journal:  Comput Struct Biotechnol J       Date:  2022-09-05       Impact factor: 6.155

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.