Literature DB >> 19760744

Exploration of chromatic aberration for multiplanar imaging: proof of concept with implications for fast, efficient autofocus.

Martin Weinigel1, Albert L Kellner, Jeffrey H Price.   

Abstract

Image-based autofocus determines focus directly from the specimen (as opposed to reflective surface positioning with an offset), but sequential acquisition of a stack of images to measure resolution/sharpness and find best focus is slower than reflective positioning. Simultaneous imaging of multiple focal planes, which is also useful for 3D imaging of live cells, is faster but requires complicated optics. With color CCD cameras and white light sources commonly available, we asked if axial chromatic aberration can be utilized to acquire multiple focal planes simultaneously, and if it can be controlled through a range sufficient for practical use. For proof of concept, we theoretically and experimentally explored the focal differences between three narrow wavelength bands on a 3-chip color CCD camera with and without glass inserts of various thicknesses and dispersions. Ray tracing yielded changes in foci of 0.65-0.9 microm upon insertion of 12.5-mm thick glass samples for green (G, 522 nm) vs. blue (B, 462 nm) and green vs. red (G-R, 604 nm). On a microscope: (1) With no glass inserts, the differences in foci were 2.15 microm (G-B) and 0.43 microm (G-R); (2) With glass inserts, the maximum change in foci for G vs. B was 0.44 microm and for G vs. R was 0.26 microm; and (3) An 11.3 mm thick N-BK7 glass insert shifted the foci 0.9 microm (R), 0.6 microm (G), and 0.35 microm (B), such that the B and R foci were farther apart (2.1 microm vs. 1.7 microm) and the R and G foci were closer together (0.25 microm vs. 0.45 microm). The slopes of the differences in foci were dependent on thickness, index of refraction, and dispersion. The measured differences in foci are comparable to the axial steps of 0.1-0.24 microm commonly used for autofocus, and focal plane separation can be altered by inserting optical elements of various dispersions and thicknesses. By enabling acquisition of multiple, axially offset images simultaneously, chromatic aberration, normally an imaging pariah, creates a possible mechanism for efficient multiplanar imaging of multiple spectral bands from white light illumination.

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Year:  2009        PMID: 19760744      PMCID: PMC2838728          DOI: 10.1002/cyto.a.20788

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  38 in total

1.  Genome-wide survey of protein kinases required for cell cycle progression.

Authors:  M Bettencourt-Dias; R Giet; R Sinka; A Mazumdar; W G Lock; F Balloux; P J Zafiropoulos; S Yamaguchi; S Winter; R W Carthew; M Cooper; D Jones; L Frenz; D M Glover
Journal:  Nature       Date:  2004-12-23       Impact factor: 49.962

2.  Simultaneous imaging of different focal planes in fluorescence microscopy for the study of cellular dynamics in three dimensions.

Authors:  Prashant Prabhat; Sripad Ram; E Sally Ward; Raimund J Ober
Journal:  IEEE Trans Nanobioscience       Date:  2004-12       Impact factor: 2.935

3.  Elucidation of intracellular recycling pathways leading to exocytosis of the Fc receptor, FcRn, by using multifocal plane microscopy.

Authors:  Prashant Prabhat; Zhuo Gan; Jerry Chao; Sripad Ram; Carlos Vaccaro; Steven Gibbons; Raimund J Ober; E Sally Ward
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-23       Impact factor: 11.205

4.  Preattentive texture discrimination with early vision mechanisms.

Authors:  J Malik; P Perona
Journal:  J Opt Soc Am A       Date:  1990-05       Impact factor: 2.129

5.  A comparison of different focus functions for use in autofocus algorithms.

Authors:  F C Groen; I T Young; G Ligthart
Journal:  Cytometry       Date:  1985-03

6.  Estrogen-receptor-alpha exchange and chromatin dynamics are ligand- and domain-dependent.

Authors:  Z Dave Sharp; Maureen G Mancini; Cruz A Hinojos; Fangyan Dai; Valeria Berno; Adam T Szafran; Kelly P Smith; Tanmay P Lele; Tanmay T Lele; Donald E Ingber; Michael A Mancini
Journal:  J Cell Sci       Date:  2006-09-12       Impact factor: 5.285

7.  Chromatic aberration correction and deconvolution for UV sensitive imaging of fluorescent sterols in cytoplasmic lipid droplets.

Authors:  Daniel Wüstner; Nils J Faergeman
Journal:  Cytometry A       Date:  2008-08       Impact factor: 4.355

8.  Identification of p53 regulators by genome-wide functional analysis.

Authors:  Qihong Huang; Angel Raya; Paul DeJesus; Sheng-Hao Chao; Kim C Quon; Jeremy S Caldwell; Sumit K Chanda; Juan C Izpisua-Belmonte; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-27       Impact factor: 11.205

9.  Objective clustering of proteins based on subcellular location patterns.

Authors:  Xiang Chen; Robert F Murphy
Journal:  J Biomed Biotechnol       Date:  2005-06-30

10.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Authors:  Anne E Carpenter; Thouis R Jones; Michael R Lamprecht; Colin Clarke; In Han Kang; Ola Friman; David A Guertin; Joo Han Chang; Robert A Lindquist; Jason Moffat; Polina Golland; David M Sabatini
Journal:  Genome Biol       Date:  2006-10-31       Impact factor: 13.583

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