Literature DB >> 19758821

Influence of size on apparent scrambling of sequence during CID of b-type ions.

Samuel Molesworth1, Sandra Osburn, Michael Van Stipdonk.   

Abstract

We investigated the influence of peptide size on the apparent loss of sequence during collision-induced dissociation (CID) of b ions using a group of peptides containing from between 4 and 10 residues. Although scrambling of sequence for b3+ generated from tetrapeptides is minimal, significant formation of nondirect sequence ions (i.e., ions for which scrambling has apparently occurred) was observed for all larger b ions included in the study.

Mesh：

Substances：

Year:  2009        PMID： 19758821     DOI： 10.1016/j.jasms.2009.07.023

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN： 1044-0305            Impact factor:   3.109


  18 in total

1.  Multi-stage tandem mass spectrometry of metal cationized leucine enkephalin and leucine enkephalin amide.

Authors:  J M Barr; M J Van Stipdonk
Journal:  Rapid Commun Mass Spectrom       Date:  2002       Impact factor: 2.419

Review 2.  Fragmentation pathways of protonated peptides.

Authors:  Béla Paizs; Sándor Suhai
Journal:  Mass Spectrom Rev       Date:  2005 Jul-Aug       Impact factor: 10.946

Review 3.  The ABC's (and XYZ's) of peptide sequencing.

Authors:  Hanno Steen; Matthias Mann
Journal:  Nat Rev Mol Cell Biol       Date:  2004-09       Impact factor: 94.444

4.  Spectroscopic and theoretical evidence for oxazolone ring formation in collision-induced dissociation of peptides.

Authors:  Nick C Polfer; Jos Oomens; Sándor Suhai; Béla Paizs
Journal:  J Am Chem Soc       Date:  2005-12-14       Impact factor: 15.419

5.  Evidence for structural variants of a- and b-type peptide fragment ions using combined ion mobility/mass spectrometry.

Authors:  Isabel Riba-Garcia; Kevin Giles; Robert H Bateman; Simon J Gaskell
Journal:  J Am Soc Mass Spectrom       Date:  2008-01-31       Impact factor: 3.109

6.  Sequence-scrambling fragmentation pathways of protonated peptides.

Authors:  Christian Bleiholder; Sandra Osburn; Todd D Williams; Sándor Suhai; Michael Van Stipdonk; Alex G Harrison; Béla Paizs
Journal:  J Am Chem Soc       Date:  2008-12-31       Impact factor: 15.419

7.  The structure and fragmentation of B n (n≥3) ions in peptide spectra.

Authors:  T Yalcin; I G Csizmadia; M R Peterson; A G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  1996-03       Impact factor: 3.109

Review 8.  Mobile and localized protons: a framework for understanding peptide dissociation.

Authors:  V H Wysocki; G Tsaprailis; L L Smith; L A Breci
Journal:  J Mass Spectrom       Date:  2000-12       Impact factor: 1.982

9.  Dissociation of the peptide bond in protonated peptides.

Authors:  M J Polce; D Ren; C Wesdemiotis
Journal:  J Mass Spectrom       Date:  2000-12       Impact factor: 1.982

10.  Why Are B ions stable species in peptide spectra?

Authors:  T Yalcin; C Khouw; I G Csizmadia; M R Peterson; A G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  1995-12       Impact factor: 3.109
View more
  25 in total

1.  Occurrence of C-terminal residue exclusion in peptide fragmentation by ESI and MALDI tandem mass spectrometry.

Authors:  Mathieu Dupré; Sonia Cantel; Jean Martinez; Christine Enjalbal
Journal:  J Am Soc Mass Spectrom       Date:  2011-11-18       Impact factor: 3.109

2.  Investigation of scrambled ions in tandem mass spectra. Part 1. Statistical characterization.

Authors:  Nai-ping Dong; Yi-zeng Liang; Lun-zhao Yi
Journal:  J Am Soc Mass Spectrom       Date:  2012-04-27       Impact factor: 3.109

3.  Conformation-specific spectroscopy of peptide fragment ions in a low-temperature ion trap.

Authors:  Tobias N Wassermann; Oleg V Boyarkin; Béla Paizs; Thomas R Rizzo
Journal:  J Am Soc Mass Spectrom       Date:  2012-03-30       Impact factor: 3.109

4.  Mass spectrometry analysis of 2-nitrophenylhydrazine carboxy derivatized peptides.

Authors:  Junmei Zhang; Rowaida Al-Eryani; Haydn L Ball
Journal:  J Am Soc Mass Spectrom       Date:  2011-08-04       Impact factor: 3.109

5.  Sequence scrambling in shotgun proteomics is negligible.

Authors:  Anton A Goloborodko; Mikhail V Gorshkov; David M Good; Roman A Zubarev
Journal:  J Am Soc Mass Spectrom       Date:  2011-04-15       Impact factor: 3.109

6.  Effect of the His residue on the cyclization of b ions.

Authors:  Benjamin J Bythell; Michaela Knapp-Mohammady; Béla Paizs; Alex G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  2010-05-13       Impact factor: 3.109

7.  The extent and effects of peptide sequence scrambling via formation of macrocyclic B ions in model proteins.

Authors:  Irine S Saminathan; X Simon Wang; Yuzhu Guo; Olga Krakovska; Sébastien Voisin; Alan C Hopkinson; K W Michael Siu
Journal:  J Am Soc Mass Spectrom       Date:  2010-09-09       Impact factor: 3.109

8.  Fragmentation reactions of b(5) and a (5) ions containing proline--the structures of a(5) ions.

Authors:  Alex G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  2011-09-20       Impact factor: 3.109

9.  Mass spectrometry characterization of the thermal decomposition/digestion (TDD) at cysteine in peptides and proteins in the condensed phase.

Authors:  Franco Basile; Shaofeng Zhang; Sujit Kumar Kandar; Liang Lu
Journal:  J Am Soc Mass Spectrom       Date:  2011-08-10       Impact factor: 3.109

10.  Evidence for sequence scrambling and divergent H/D exchange reactions of doubly-charged isobaric b-type fragment ions.

Authors:  Behrooz Zekavat; Mahsan Miladi; Abdullah H Al-Fdeilat; Arpad Somogyi; Touradj Solouki
Journal:  J Am Soc Mass Spectrom       Date:  2013-12-18       Impact factor: 3.109
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.