Literature DB >> 19756627

The complete mitochondrial genome sequence of the liverwort Pleurozia purpurea reveals extremely conservative mitochondrial genome evolution in liverworts.

Bin Wang1, Jiayu Xue, Libo Li, Yang Liu, Yin-Long Qiu.   

Abstract

Plant mitochondrial genomes have been known to be highly unusual in their large sizes, frequent intra-genomic rearrangement, and generally conservative sequence evolution. Recent studies show that in early land plants the mitochondrial genomes exhibit a mixed mode of conservative yet dynamic evolution. Here, we report the completely sequenced mitochondrial genome from the liverwort Pleurozia purpurea. The circular genome has a size of 168,526 base pairs, containing 43 protein-coding genes, 3 rRNA genes, 25 tRNA genes, and 31 group I or II introns. It differs from the Marchantia polymorpha mitochondrial genome, the only other liverwort chondriome that has been sequenced, in lacking two genes (trnRucg and trnTggu) and one intron (rrn18i1065gII). The two genomes have identical gene orders and highly similar sequences in exons, introns, and intergenic spacers. Finally, a comparative analysis of duplicated trnRucu and other trnR genes from the two liverworts and several other organisms identified the recent lateral origin of trnRucg in Marchantia mtDNA through modification of a duplicated trnRucu. This study shows that the mitochondrial genomes evolve extremely slowly in liverworts, the earliest-diverging lineage of extant land plants, in stark contrast to what is known of highly dynamic evolution of mitochondrial genomes in seed plants.

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Year:  2009        PMID: 19756627     DOI: 10.1007/s00294-009-0273-7

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  32 in total

1.  Complex mtDNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: implication of potential sequencing errors caused by large-unit repeats.

Authors:  R M Stupar; J W Lilly; C D Town; Z Cheng; S Kaul; C R Buell; J Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-17       Impact factor: 11.205

Review 2.  Mitochondrial evolution.

Authors:  M W Gray; G Burger; B F Lang
Journal:  Science       Date:  1999-03-05       Impact factor: 47.728

3.  Transfer RNA gene recruitment in mitochondrial DNA.

Authors:  Dennis V Lavrov; B Franz Lang
Journal:  Trends Genet       Date:  2005-03       Impact factor: 11.639

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  The mitochondrial nad2 gene as a novel marker locus for phylogenetic analysis of early land plants: a comparative analysis in mosses.

Authors:  S Beckert; H Muhle; D Pruchner; V Knoop
Journal:  Mol Phylogenet Evol       Date:  2001-01       Impact factor: 4.286

6.  The gain of three mitochondrial introns identifies liverworts as the earliest land plants.

Authors:  Y L Qiu; Y Cho; J C Cox; J D Palmer
Journal:  Nature       Date:  1998-08-13       Impact factor: 49.962

7.  Evolution of a pseudogene: exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae.

Authors:  Milena Groth-Malonek; Ute Wahrmund; Monika Polsakiewicz; Volker Knoop
Journal:  Mol Biol Evol       Date:  2007-02-05       Impact factor: 16.240

8.  Trans-splicing group II introns in plant mitochondria: the complete set of cis-arranged homologs in ferns, fern allies, and a hornwort.

Authors:  O Malek; V Knoop
Journal:  RNA       Date:  1998-12       Impact factor: 4.942

9.  Conservation of RNA secondary structures in two intron families including mitochondrial-, chloroplast- and nuclear-encoded members.

Authors:  F Michel; B Dujon
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

10.  A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies.

Authors:  Claude Lemieux; Christian Otis; Monique Turmel
Journal:  BMC Biol       Date:  2007-01-12       Impact factor: 7.431

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  21 in total

1.  Amino acid compositional shifts during streptophyte transitions to terrestrial habitats.

Authors:  Richard W Jobson; Yin-Long Qiu
Journal:  J Mol Evol       Date:  2010-12-14       Impact factor: 2.395

2.  Evolution of the KCS gene family in plants: the history of gene duplication, sub/neofunctionalization and redundancy.

Authors:  Hai-Song Guo; Yan-Mei Zhang; Xiao-Qin Sun; Mi-Mi Li; Yue-Yu Hang; Jia-Yu Xue
Journal:  Mol Genet Genomics       Date:  2015-11-12       Impact factor: 3.291

3.  Evolution of plant mitochondrial intron-encoded maturases: frequent lineage-specific loss and recurrent intracellular transfer to the nucleus.

Authors:  Wenhu Guo; Jeffrey P Mower
Journal:  J Mol Evol       Date:  2013-08-25       Impact factor: 2.395

4.  Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss).

Authors:  A Jonathan Shaw; Nicolas Devos; Yang Liu; Cymon J Cox; Bernard Goffinet; Kjell Ivar Flatberg; Blanka Shaw
Journal:  Ann Bot       Date:  2016-06-06       Impact factor: 4.357

5.  The complete mitochondrial genome sequence of the hornwort Phaeoceros laevis: retention of many ancient pseudogenes and conservative evolution of mitochondrial genomes in hornworts.

Authors:  Jia-Yu Xue; Yang Liu; Libo Li; Bin Wang; Yin-Long Qiu
Journal:  Curr Genet       Date:  2009-12-09       Impact factor: 3.886

6.  The mitochondrial genome of the lycophyte Huperzia squarrosa: the most archaic form in vascular plants.

Authors:  Yang Liu; Bin Wang; Peng Cui; Libo Li; Jia-Yu Xue; Jun Yu; Yin-Long Qiu
Journal:  PLoS One       Date:  2012-04-12       Impact factor: 3.240

7.  The mitochondrial genomes of the early land plants Treubia lacunosa and Anomodon rugelii: dynamic and conservative evolution.

Authors:  Yang Liu; Jia-Yu Xue; Bin Wang; Libo Li; Yin-Long Qiu
Journal:  PLoS One       Date:  2011-10-05       Impact factor: 3.240

8.  A primary survey on bryophyte species reveals two novel classes of nucleotide-binding site (NBS) genes.

Authors:  Jia-Yu Xue; Yue Wang; Ping Wu; Qiang Wang; Le-Tian Yang; Xiao-Han Pan; Bin Wang; Jian-Qun Chen
Journal:  PLoS One       Date:  2012-05-15       Impact factor: 3.240

9.  A complete sequence and transcriptomic analyses of date palm (Phoenix dactylifera L.) mitochondrial genome.

Authors:  Yongjun Fang; Hao Wu; Tongwu Zhang; Meng Yang; Yuxin Yin; Linlin Pan; Xiaoguang Yu; Xiaowei Zhang; Songnian Hu; Ibrahim S Al-Mssallem; Jun Yu
Journal:  PLoS One       Date:  2012-05-24       Impact factor: 3.240

10.  Tracing the evolution of streptophyte algae and their mitochondrial genome.

Authors:  Monique Turmel; Christian Otis; Claude Lemieux
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

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