Literature DB >> 19756011

Structural and mechanistic determinants of c-di-GMP signalling.

Tilman Schirmer1, Urs Jenal.   

Abstract

Bis-(3'-5')-cyclic dimeric GMP (c-di-GMP) is a ubiquitous second messenger that regulates cell surface-associated traits in bacteria. Components of this regulatory network include GGDEF and EAL domain-containing proteins that determine the cellular concentrations of c-di-GMP by mediating its synthesis and degradation, respectively. Crystal structure analyses in combination with functional studies have revealed the catalytic mechanisms and regulatory principles involved. Downstream, c-di-GMP is recognized by PilZ domain-containing receptors that can undergo large-scale domain rearrangements on ligand binding. Here, we review recent data on the structure and functional properties of the protein families that are involved in c-di-GMP signalling and discuss the mechanistic implications.

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Year:  2009        PMID: 19756011     DOI: 10.1038/nrmicro2203

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  100 in total

Review 1.  Get the message out: cyclic-Di-GMP regulates multiple levels of flagellum-based motility.

Authors:  Alan J Wolfe; Karen L Visick
Journal:  J Bacteriol       Date:  2007-11-09       Impact factor: 3.490

2.  Atomic-resolution structure of the cellulose synthase regulator cyclic diguanylic acid.

Authors:  M Egli; R V Gessner; L D Williams; G J Quigley; G A van der Marel; J H van Boom; A Rich; C A Frederick
Journal:  Proc Natl Acad Sci U S A       Date:  1990-04       Impact factor: 11.205

Review 3.  The HD-GYP domain, cyclic di-GMP signaling, and bacterial virulence to plants.

Authors:  J Maxwell Dow; Yvonne Fouhy; Jean F Lucey; Robert P Ryan
Journal:  Mol Plant Microbe Interact       Date:  2006-12       Impact factor: 4.171

4.  Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase.

Authors:  Thomas R M Barends; Elisabeth Hartmann; Julia J Griese; Thorsten Beitlich; Natalia V Kirienko; Dmitri A Ryjenkov; Jochen Reinstein; Robert L Shoeman; Mark Gomelsky; Ilme Schlichting
Journal:  Nature       Date:  2009-06-18       Impact factor: 49.962

5.  A staphylococcal GGDEF domain protein regulates biofilm formation independently of cyclic dimeric GMP.

Authors:  Linda M Holland; Sinéad T O'Donnell; Dmitri A Ryjenkov; Larissa Gomelsky; Shawn R Slater; Paul D Fey; Mark Gomelsky; James P O'Gara
Journal:  J Bacteriol       Date:  2008-05-23       Impact factor: 3.490

6.  Molecular structure of cyclic diguanylic acid at 1 A resolution of two crystal forms: self-association, interactions with metal ion/planar dyes and modeling studies.

Authors:  Y Guan; Y G Gao; Y C Liaw; H Robinson; A H Wang
Journal:  J Biomol Struct Dyn       Date:  1993-10

7.  Riboswitches in eubacteria sense the second messenger cyclic di-GMP.

Authors:  N Sudarsan; E R Lee; Z Weinberg; R H Moy; J N Kim; K H Link; R R Breaker
Journal:  Science       Date:  2008-07-18       Impact factor: 47.728

8.  Detergent-induced cell aggregation in subpopulations of Pseudomonas aeruginosa as a preadaptive survival strategy.

Authors:  Janosch Klebensberger; Karin Lautenschlager; Daniel Bressler; Jost Wingender; Bodo Philipp
Journal:  Environ Microbiol       Date:  2007-09       Impact factor: 5.491

9.  Niche-specificity factors of a marine oil-degrading bacterium Alcanivorax borkumensis SK2.

Authors:  Julia S Sabirova; Tatyana N Chernikova; Kenneth N Timmis; Peter N Golyshin
Journal:  FEMS Microbiol Lett       Date:  2008-06-28       Impact factor: 2.742

10.  Phosphorylation-independent regulation of the diguanylate cyclase WspR.

Authors:  Nabanita De; Michelle Pirruccello; Petya Violinova Krasteva; Narae Bae; Rahul Veera Raghavan; Holger Sondermann
Journal:  PLoS Biol       Date:  2008-03-25       Impact factor: 8.029

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  220 in total

1.  Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.

Authors:  Kathryn D Smith; Sarah V Lipchock; Scott A Strobel
Journal:  Biochemistry       Date:  2011-12-27       Impact factor: 3.162

2.  Identification and characterization of CdgB, a diguanylate cyclase involved in developmental processes in Streptomyces coelicolor.

Authors:  Ngat T Tran; Chris D Den Hengst; Juan Pablo Gomez-Escribano; Mark J Buttner
Journal:  J Bacteriol       Date:  2011-04-22       Impact factor: 3.490

3.  Structural basis of differential ligand recognition by two classes of bis-(3'-5')-cyclic dimeric guanosine monophosphate-binding riboswitches.

Authors:  Kathryn D Smith; Carly A Shanahan; Emily L Moore; Aline C Simon; Scott A Strobel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-25       Impact factor: 11.205

4.  Mechanism for gene control by a natural allosteric group I ribozyme.

Authors:  Andy G Y Chen; Narasimhan Sudarsan; Ronald R Breaker
Journal:  RNA       Date:  2011-09-29       Impact factor: 4.942

5.  Analysis of a Borrelia burgdorferi phosphodiesterase demonstrates a role for cyclic-di-guanosine monophosphate in motility and virulence.

Authors:  Syed Z Sultan; Joshua E Pitzer; Michael R Miller; Md A Motaleb
Journal:  Mol Microbiol       Date:  2010-04-27       Impact factor: 3.501

6.  Binding of cyclic diguanylate in the non-catalytic EAL domain of FimX induces a long-range conformational change.

Authors:  Yaning Qi; Mary Lay Cheng Chuah; Xueming Dong; Kailing Xie; Zhen Luo; Kai Tang; Zhao-Xun Liang
Journal:  J Biol Chem       Date:  2010-11-22       Impact factor: 5.157

7.  Differential analogue binding by two classes of c-di-GMP riboswitches.

Authors:  Carly A Shanahan; Barbara L Gaffney; Roger A Jones; Scott A Strobel
Journal:  J Am Chem Soc       Date:  2011-09-08       Impact factor: 15.419

8.  Mechanistic insights into c-di-GMP-dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa.

Authors:  Bruno Y Matsuyama; Petya V Krasteva; Claudine Baraquet; Caroline S Harwood; Holger Sondermann; Marcos V A S Navarro
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

9.  The Xanthomonas oryzae pv. oryzae PilZ Domain Proteins Function Differentially in Cyclic di-GMP Binding and Regulation of Virulence and Motility.

Authors:  Fenghuan Yang; Fang Tian; Huamin Chen; William Hutchins; Ching-Hong Yang; Chenyang He
Journal:  Appl Environ Microbiol       Date:  2015-04-24       Impact factor: 4.792

10.  Identification of c-di-GMP derivatives resistant to an EAL domain phosphodiesterase.

Authors:  Carly A Shanahan; Barbara L Gaffney; Roger A Jones; Scott A Strobel
Journal:  Biochemistry       Date:  2013-01-03       Impact factor: 3.162

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